演化之聲
THE SOUND OF EVOLUTION
Human Gene AtlasHOMO SAPIENS
HUMAN PROTEIN-CODING GENE

TPR

translocated promoter region, nuclear basket protein

TPR(translocated promoter region, nuclear basket protein)是核孔複合體的重要支架成分,並參與核質運輸、染色質分布及有絲分裂檢查點調控。

Homo sapiens1q31.1UniProt P12270
OFFICIAL SYMBOL
TPR
CHROMOSOME
1
UNIPROT
P12270
PDB / ALPHAFOLD
5TO5
01 / GENE OVERVIEW

基因總覽

TPR(translocated promoter region, nuclear basket protein)是蛋白質編碼基因,產物屬於 TPR family,為核孔複合體(NPC)的組成成分。NPC 是核膜上的運輸複合體;TPR 位於其核內側,形成稱為 nuclear basket 的纖維結構。蛋白質特徵資料將其部分區段標示為與 NPC 結合、核輸入及特定互作相關,也包含多個預測為無序的區域。除核孔周邊的結構角色外,TPR 亦與染色質在細胞核周邊的分布,以及有絲分裂期間的紡錘體檢查點訊號有關。

Official symbol
TPR
Gene name
translocated promoter region, nuclear basket protein
Organism
Homo sapiens
Gene type
Protein coding
HGNC ID
HGNC:12017
UniProt
P12270
02 / NOMENCLATURE

基因異名與舊稱

Alternative gene names & synonyms
HGNC 未提供其他基因異名。

異名取自 HGNC,可能包含歷史名稱;蛋白質名稱以 UniProt 註解為準。

03 / GENOMIC CONTEXT

染色體位置與基因結構

Chromosome 11q31.1
chr1 · 248,956,422 bp · GRCh38chr1p36.33 · 1–2300000 · gnegchr1p36.32 · 2300001–5300000 · gpos25chr1p36.31 · 5300001–7100000 · gnegchr1p36.23 · 7100001–9100000 · gpos25chr1p36.22 · 9100001–12500000 · gnegchr1p36.21 · 12500001–15900000 · gpos50chr1p36.13 · 15900001–20100000 · gnegchr1p36.12 · 20100001–23600000 · gpos25chr1p36.11 · 23600001–27600000 · gnegchr1p35.3 · 27600001–29900000 · gpos25chr1p35.2 · 29900001–32300000 · gnegchr1p35.1 · 32300001–34300000 · gpos25chr1p34.3 · 34300001–39600000 · gnegchr1p34.2 · 39600001–43700000 · gpos25chr1p34.1 · 43700001–46300000 · gnegchr1p33 · 46300001–50200000 · gpos75chr1p32.3 · 50200001–55600000 · gnegchr1p32.2 · 55600001–58500000 · gpos50chr1p32.1 · 58500001–60800000 · gnegchr1p31.3 · 60800001–68500000 · gpos50chr1p31.2 · 68500001–69300000 · gnegchr1p31.1 · 69300001–84400000 · gpos100chr1p22.3 · 84400001–87900000 · gnegchr1p22.2 · 87900001–91500000 · gpos75chr1p22.1 · 91500001–94300000 · gnegchr1p21.3 · 94300001–99300000 · gpos75chr1p21.2 · 99300001–101800000 · gnegchr1p21.1 · 101800001–106700000 · gpos100chr1p13.3 · 106700001–111200000 · gnegchr1p13.2 · 111200001–115500000 · gpos50chr1p13.1 · 115500001–117200000 · gnegchr1p12 · 117200001–120400000 · gpos50chr1p11.2 · 120400001–121700000 · gnegchr1p11.1 · 121700001–123400000 · acenchr1q11 · 123400001–125100000 · acenchr1q12 · 125100001–143200000 · gvarchr1q21.1 · 143200001–147500000 · gnegchr1q21.2 · 147500001–150600000 · gpos50chr1q21.3 · 150600001–155100000 · gnegchr1q22 · 155100001–156600000 · gpos50chr1q23.1 · 156600001–159100000 · gnegchr1q23.2 · 159100001–160500000 · gpos50chr1q23.3 · 160500001–165500000 · gnegchr1q24.1 · 165500001–167200000 · gpos50chr1q24.2 · 167200001–170900000 · gnegchr1q24.3 · 170900001–173000000 · gpos75chr1q25.1 · 173000001–176100000 · gnegchr1q25.2 · 176100001–180300000 · gpos50chr1q25.3 · 180300001–185800000 · gnegchr1q31.1 · 185800001–190800000 · gpos100chr1q31.2 · 190800001–193800000 · gnegchr1q31.3 · 193800001–198700000 · gpos100chr1q32.1 · 198700001–207100000 · gnegchr1q32.2 · 207100001–211300000 · gpos25chr1q32.3 · 211300001–214400000 · gnegchr1q41 · 214400001–223900000 · gpos100chr1q42.11 · 223900001–224400000 · gnegchr1q42.12 · 224400001–226800000 · gpos25chr1q42.13 · 226800001–230500000 · gnegchr1q42.2 · 230500001–234600000 · gpos50chr1q42.3 · 234600001–236400000 · gnegchr1q43 · 236400001–243500000 · gpos75chr1q44 · 243500001–248956422 · gnegTPRpq1 bp248,956,422 bp
GRCh38 / 1-based inclusiveDirection: reverse strand (−)
Genomic coordinates
chr1:186,311,188–186,375,693
Gene span
64,506 bp
Strand
Reverse (−)
Gene assembly
GRCh38
查看實際轉錄本與 exon 註解
TranscriptGenomic coordinatesExons
ENST00000367478 ★186,311,652–186,375,25351
ENST00001145219186,311,188–186,375,25351
ENST00000613151186,353,871–186,375,32518
ENST00000451586186,373,393–186,375,6933

顯示 4/4 個蛋白質編碼轉錄本;canonical 優先。

帶型與著絲點依 Ensembl 座標繪製;核染色體長度以 GRCh38 第 1 號染色體為共同尺度。黃色標記表示本基因位置,細小區間加粗以利辨識;實際基因長度與 exon 見下方資料。

04 / BIOLOGICAL FUNCTION

分子功能與生物學過程

TPR 是核孔複合體(NPC)的支架成分,參與核膜兩側的蛋白質與 mRNA 運輸,支持正常的核質運輸。它也參與細胞間期核周邊染色質區域的建立,並與 NPC 周圍異染色質排除區的形成或維持有關,因而兼具核孔結構與核內空間組織的角色。

在 RNA 調控方面,TPR 參與未剪接 mRNA 的品質控制與核內滯留。與 NUP153 協同時,它能以不依賴 NXF1 或 KHDRBS1 的方式,調節帶有 constitutive transport element(CTE)的未剪接 mRNA 核輸出;同時抑制這類 mRNA 與大型多核糖體的結合及翻譯起始。來源指出,TPR 不參與由 Rev response element(RRE)介導的未剪接 mRNA 輸出,顯示其作用並非涵蓋所有未剪接 mRNA 的出口途徑。

TPR 也與熱休克基因的 mRNA 輸出相關。在壓力誘發條件下,它可同時關聯 HSP70 啟動子染色質及由該啟動子轉錄的 mRNA;並與 HSF1 的互作增加,促進壓力誘發 HSP70 mRNA 的輸出。此外,TPR 可調節活化的 MAPK1/ERK2 與 huntingtin/HTT 的核質運輸,並可能作為 XPO1/CRM1 介導之核輸出複合體的停靠位置。不過,部分研究認為 TPR 對核蛋白輸出的調節作用有限。

在有絲分裂中,TPR 作為紡錘體組裝檢查點(SAC)的空間調節因子,協助檢查點蛋白 MAD1L1 與 MAD2L1 在染色體排列前、後期轉換期間,及時有效地被募集至尚未附著的動粒。來源亦指出 TPR 的 N 端參與致癌激酶活化;此描述限於來源所述的功能,不足以據此推論特定疾病中的因果關係。

05 / GENE REGULATION

Promoter 與基因調控

到

以 TSS = 0 為基準:負數為上游、正數為下游,包含起點與終點。每次最多取得 100,000 bp。

TSS: 186375253 · 負股
依所選 TSS 來源,取得指定上、下游範圍的基因組序列。
擷取區間依所選 TSS 計算;調控註解與實驗支持的 TSS 可在下方查閱。
>TPR ENST00000367478 GRCh38 chr1:186375153-186376253 strand=-1 5′→3′
相對 TSS:-1000 到 +100 bp;1101 bp
依轉錄本 TSS 擷取的基因組序列;TSS = 0,兩端包含,未驗證為 promoter
TAAAACATAGGCTACACTCAAAGTGCTACCGGTTTCTTTTAATTCTCCTCCTGAAGAATTAACCCGGGTC
CTTAAATTCCCGGGTACTGAATCACTCAGTGCCACCTCCCCACCACCAAAAACCATTTAGGTACGCCGTT
TCACACAAGGTAAGTTCGTCAGAAGTGTGTGCCGGAGTGACTGTCCATATGGTTCCAACACTGTCCCTTC
CTTTTTCTCTTGAAAAGAGAGCACACACACACACACACACACACACACACTACACTTAGGCTGACTTACC
TGTTTTCAGAATGTGCACTCGTGGCAGACAATTACCTCGGACGGTCTCTCCGCCGGAGATGGGGGTTTCG
GGCCCAAGTACCAGCCTCTAGGGGCCAGATTCCCTCCGGTCTCAATTCACTGCCACTGAATTCATCAGAA
AGCGACCTACTTCCCACACCTCACTTCCCACTCCAAAGCCAGGGACTTGGGAGTCAGGTGGCGCAGATTG
ATGACGTAAAAGCCCCCCCTCCCTTCCCCGCAGAGCCTCAGCCAAAGCGACTGCGGTCGCCACCCCGCCC
CCTTCTGGGCGCCATAGAGAGCGTGGCGGTATCCCGGAGCCTGCCGTCCGGCCCTACCGGGACCGATGCC
CTCTAGTGGCTCAGTGTCCAGAAGCCGCCAACGAGGACGATCCATGGCATCCCGGGGCTTTGACGGTAAG
GTCACCAGCTCTTCAGGGAGGGCCAAGGGGTGACGAGTACGTATGTGGCGCCACCGTGCGGACAGCGGTT
ACGGGGCCGAGATAGGAGAGCCAGGGGAGCGGGGAGAAAAACGGAAGCTGAGAGGGCGGTGCAGCATTGG
GCTCCCGGAAAAGAATGAGAAAAACACTACATTTCCCAGAGCCCTACAAGGCCTGAAGTGGGTGGAGCTG
GAAGCCGGAAAATTGGGTGCGCAAGAGGATCAGGGATAGCCTCTGAGCTCGGGTTCCCAGGGTTCGTAGC
TTCCAACGGCTGCGCGCGCACTTCGGTCGCGGGCGGTGAGGTGCTGTTGCTGAAACGCTGCCGCTGAGGG
TGGACTCGATTTCCCAGGGTCCCGCCGCGGGAGTCTCCGGCGGGCGGGCGC
TPR 位於負股。上下游依轉錄方向計算,序列一律以該方向的 5′→3′ 顯示;負股會取得反向互補序列。
EPDnew 實驗支持 promoter/TSS · 2 筆
EPDnew IDTSS(1-based)股向來源顯示區間
TPR_1 ↗1:186,375,228負股186,375,218–186,375,277
TPR_2 ↗1:186,375,734負股186,375,724–186,375,783

EPDnew human v006 · UCSC hg38,GRCh38/hg38,透過 UCSC 取得。TSS 具有 CAGE/RAMPAGE 等實驗資料支持;任意擷取的上下游區間仍需另行判讀調控功能,不能視為整段皆經功能驗證。

EPD 封存狀態 ↗ · UCSC 資料說明 ↗ · EPD team, SIB Swiss Institute of Bioinformatics; UCSC Genome Browser · CC BY 4.0

查看已取得的調控/motif 註解

ENSR1_B3CZN3 · promoter · 186375243–186375848 · regulatory

ENSR1_53LSLDJ · CTCF_binding_site · 186375489–186375510 · regulatory

ENSR1_53LSLF4 · CTCF_binding_site · 186375611–186375632 · regulatory

ENSR1_53LSLFF · CTCF_binding_site · 186375682–186375703 · regulatory

ENSR1_53LSLFS · CTCF_binding_site · 186375767–186375788 · regulatory

ENSR1_B3CZN5 · enhancer · 186375849–186376503 · regulatory

ENSR1_53LSLWJ · CTCF_binding_site · 186378512–186378533 · regulatory

· motif · 186375020–186375030 · motif

· motif · 186375346–186375356 · motif

· motif · 186375428–186375448 · motif

· motif · 186375435–186375446 · motif

· motif · 186375435–186375448 · motif

· motif · 186375483–186375498 · motif

· motif · 186375491–186375507 · motif

· motif · 186375520–186375535 · motif

· motif · 186375543–186375556 · motif

· motif · 186375546–186375558 · motif

· motif · 186375613–186375629 · motif

· motif · 186375684–186375700 · motif

· motif · 186375692–186375702 · motif

· motif · 186375742–186375752 · motif

· motif · 186375752–186375765 · motif

· motif · 186375752–186375765 · motif

· motif · 186375769–186375785 · motif

· motif · 186378514–186378530 · motif

目前未取得此類註解。
序列擷取依所選 TSS 與相對範圍計算;該區間的調控功能需參照相應的實驗證據。
06 / PROTEIN ANATOMY

蛋白質結構域與序列

參考蛋白質長度:2363 aa

1 aa2363 aa功能區域
依 P12270 的 UniProt 殘基座標與蛋白質長度繪製;結構域、DNA 結合區、功能區域與基序分列,重疊註解分行顯示。區域色彩區分類型,並非活性或信心分數。

TPR 蛋白長 2,363 個胺基酸,屬於 TPR family。其第 437–513 位區段與 NPC 結合有關;第 1,812–1,867 位區段則足以且必須用於核輸入。第 14–117 位及 1,218–1,320 位區段對 HSF1 互作具有必要性。序列註解另將 912–935、1,454–1,474、1,619–1,674、1,803–2,134 及 2,227–2,363 位區段標示為無序區域。

功能區域Sufficient for interaction with TPR3–13 aa
功能區域Necessary for interaction with HSF114–117 aa
功能區域Necessary for association to the NPC437–513 aa
功能區域Disordered912–935 aa
功能區域Necessary for interaction with HSF11218–1320 aa
功能區域Disordered1454–1474 aa
功能區域Disordered1619–1674 aa
功能區域Disordered1803–2134 aa
功能區域Sufficient and essential for mediating its nuclear import1812–1867 aa
功能區域Disordered2227–2363 aa
07 / STRUCTURAL BIOLOGY

蛋白質三維結構

自動載入 · 可拖曳旋轉與縮放
正在載入 PDB · 5TO5…

PDB · 5TO5

X-ray · 2.50 A · A/B=2-142

查看原始結構紀錄 ↗

實驗模型;依序列位置著色,可能只覆蓋局部區域。

08 / SUBCELLULAR LOCALIZATION

細胞內定位

動物細胞結構與蛋白質定位細胞膜包圍細胞質;細胞核內有核仁,粗面內質網鄰接核膜,粒線體含內膜摺疊,高基氏體由堆疊扁平囊組成。深綠色圓點依來源註解標記定位,器官大小與數量為示意。圓點數量不表示含量;未繪示構造列於圖旁文字。 細胞質 細胞膜 粗面內質網與核糖體 細胞核與核膜 核仁 粒線體:外膜與含摺疊的內膜 高基氏體與運輸囊泡 胞內體、溶體與其他囊泡(示意)
定位:Nucleus;Nucleus membrane;Nucleus envelope;Nucleus, nuclear pore complex;Cytoplasm;Cytoplasm, cytoskeleton, spindle;Chromosome, centromere, kinetochore

細胞間期,TPR 位於 NPC 核內側並構成 nuclear basket;來源亦記載過其位於 NPC 細胞質側邊緣的觀察。 它可在核與細胞質間穿梭,並依賴 XPO1/CRM1 及 Importin alpha/Importin beta receptor 進入細胞核。 有絲分裂期間,TPR 至前期前中期仍與核膜相關,之後轉至紡錘體及動粒相關區域,並在末期與胞質分裂時回到重建中的核膜。

深綠色圓點:來源記載的蛋白質定位;數量不表示含量。

未繪示構造:Chromosome, centromere, kinetochore。這些構造未在通用細胞圖中標點,仍保留來源定位名稱。

動物細胞結構示意;器官大小與數量不按比例。點選細胞構造可查看定位註解。

09 / PROTEIN NETWORK

交互作用與訊號網絡

圖中 1 個夥伴 · 最多顯示 50 個
TPRTPRMAD1L1
來源支持的結構/直接結合關係其他來源關係紀錄

拖曳節點後放開可帶動位置變化;點選夥伴查看證據。位置與連線長度不代表結合強度,圖中未推定夥伴彼此之間的關係。

更多交互作用夥伴 · 已取得 1 個夥伴
第 1 頁

查看 UniProt 完整互作來源 ↗

TPR 是 NPC 的一部分,並與 NUP153 直接互作;它也與 XPO1/CRM1 核輸出複合體、Importin alpha/Importin beta receptor 及 dynein 1 complex 相關。TPR 可形成同源二聚體。其與 KPNB1 的互作依賴 RanGTP;與 MAPK1/ERK2 的互作涉及兩者的磷酸化形式,且需要 MAPK1/ERK2 二聚化,並在 EGF 刺激後增加。TPR 亦與 HSF1、huntingtin/HTT、MAD1L1、MAD2L1、TTK、DYNLL1 等互作;其中 HSF1 互作會隨壓力反應增強。與擴增 polyglutamine 的聚集型 huntingtin/HTT 互作則受抑制。

10 / HUMAN HEALTH

疾病與遺傳關聯

TPR 相關染色體重排曾見於乳突狀甲狀腺癌:TPR 的 5′端與 NTRK1 蛋白激酶區域相接,形成融合蛋白 TRK-T1。另有資料記載 TPR 參與與 MET 的致瘤性重排,但未提供更多機制細節。此外,TPR 基因變異被報告與常染色體隱性神經發育疾病 Intellectual developmental disorder, autosomal recessive 79 有關;該疾病自嬰兒期出現,可有整體發展遲緩、嚴重智能障礙、言語能力差或缺失、共濟失調及出生後小頭症。

個別變異的臨床意義取決於其證據;基因層級的疾病關聯不能套用至所有變異。
11 / CONTEXTUAL FUNCTIONAL EVIDENCE MATRIX

Contextual Functional Evidence Matrix

功能證據與細胞情境矩陣

矩陣以「功能主張」為列,以細胞情境、干預條件、量測結果與證據來源為欄,方便比較同一功能在不同條件下的支持情形。只有含情境與實驗資訊的紀錄會列入矩陣;一般功能註解另列於下方。

6 筆功能證據/註解
目前尚無同時具備實驗情境與干預/量測資訊的證據列。可查核的功能敘述列於「功能註解總覽」,空白實驗欄位不以推測補齊。
功能註解總覽 · 6 筆
功能面向功能敘述證據類型可查核來源
功能TPR 是核孔複合體的支架成分,支持蛋白質與 mRNA 的核質運輸,也參與核周邊染色質區域及 NPC 相關異染色質排除區的組織。它調控特定 CTE 未剪接 mRNA 的輸出與翻譯,參與壓力誘發 HSP70 mRNA 輸出,並可調節 MAPK1/ERK2、huntingtin/HTT 運輸及紡錘體檢查點蛋白募集;其對核蛋白輸出的作用被部分作者認為有限。含實驗來源
證據與來源

Component of the nuclear pore complex (NPC), a complex required for the trafficking across the nuclear envelope. Functions as a scaffolding element in the nuclear phase of the NPC essential for normal nucleocytoplasmic transport of proteins and mRNAs, plays a role in the establishment of nuclear-peripheral chromatin compartmentalization in interphase, and in the mitotic spindle checkpoint signaling during mitosis. Involved in the quality control and retention of unspliced mRNAs in the nucleus; in association with NUP153, regulates the nuclear export of unspliced mRNA species bearing constitutive transport element (CTE) in a NXF1- and KHDRBS1-independent manner. Negatively regulates both the association of CTE-containing mRNA with large polyribosomes and translation initiation. Does not play any role in Rev response element (RRE)-mediated export of unspliced mRNAs. Implicated in nuclear export of mRNAs transcribed from heat shock gene promoters; associates both with chromatin in the HSP70 promoter and with mRNAs transcribed from this promoter under stress-induced conditions. Modulates the nucleocytoplasmic transport of activated MAPK1/ERK2 and huntingtin/HTT and may serve as a docking site for the XPO1/CRM1-mediated nuclear export complex. According to some authors, plays a limited role in the regulation of nuclear protein export. Also plays a role as a structural and functional element of the perinuclear chromatin distribution; involved in the formation and/or maintenance of NPC-associated perinuclear heterochromatin exclusion zones (HEZs). Finally, acts as a spatial regulator of the spindle-assembly checkpoint (SAC) response ensuring a timely and effective recruitment of spindle checkpoint proteins like MAD1L1 and MAD2L1 to unattached kinetochore during the metaphase-anaphase transition before chromosome congression. Its N-terminus is involved in activation of oncogenic kinases

PMID 11952838 ↗ · PMID 15654337 ↗ · PMID 17897941 ↗ · PMID 18794356 ↗ · PMID 18981471 ↗ · PMID 19273613 ↗ · PMID 20133940 ↗ · PMID 20407419 ↗ · PMID 21613532 ↗ · PMID 22253824 ↗ · PMID 9864356 ↗

開啟資料庫紀錄 ↗

交互作用TPR 可形成同源二聚體,並作為核孔複合體的一部分,與多種輸送、細胞骨架及檢查點蛋白互作。部分互作具有特定條件,例如 TPR 與 KPNB1 的結合依賴 RanGTP,與 MAPK1/ERK2 的互作在 EGF 刺激後增強,與 HSF1 的互作則隨壓力反應增加;聚集且帶有擴增 polyglutamine 的 huntingtin/HTT 會抑制其與 TPR 的互作。含實驗來源
證據與來源

Interacts with IFI204 (via C-terminal region). Interacts with IFI203 (By similarity). Homodimer. Part of the nuclear pore complex (NPC). Associates with the XPO1/CRM1-mediated nuclear export complex, the Importin alpha/Importin beta receptor and the dynein 1 complex. Interacts (via C-terminal domain) with the KPNB1; the interaction occurs in a RanGTP-dependent manner. Interacts (via C-terminal regionand phosphorylated form) with MAPK1/ERK2 (via phosphorylated form); the interaction requires dimerization of MAPK1/ERK2 and increases following EGF stimulation. Interacts with MAPK3/ERK1; the interaction increases following EGF stimulation. Interacts (via coiled coil region) with NUP153; the interaction is direct. Interacts with HSF1; the interaction increases in a stress-responsive manner and stimulates export of stress-induced HSP70 mRNA. Interacts with huntingtin/HTT; the interaction is inhibited by aggregated huntingtin/HTT forms with expanded polyglutamine stretch. Interacts with MAD1L1 (via N-terminal region), MAD2L1, and TTK; the interactions occurs in a microtubule-independent manner. Interacts (via middle region) with DYNLL1. Interacts with DCTN1, dynein, NUP153 and tubulin. Interacts with MTA1. Interacts with ZC3HC1; this interaction mediates ZC3HC1 nuclear envelopes (NE)-association but also required for proper positioning of a substantial amount of TPR at the nuclear basket (NB)

PMID 12802065 ↗ · PMID 15229283 ↗ · PMID 15654337 ↗ · PMID 17897941 ↗ · PMID 18794356 ↗ · PMID 18981471 ↗ · PMID 19273613 ↗ · PMID 19835572 ↗ · PMID 20133940 ↗ · PMID 22253824 ↗ · PMID 24970816 ↗ · PMID 34440706 ↗

開啟資料庫紀錄 ↗

細胞定位TPR 在細胞間期主要位於 NPC 核內側並形成 nuclear basket,但也有其位於 NPC 細胞質側邊緣的觀察。它可在核質間穿梭;有絲分裂時由核膜轉至動態的紡錘體基質,並出現在動粒相關區域,之後於末期及胞質分裂期間回到重建中的核膜。它與 MAD2L1 在紡錘體基質共定位,但未在動粒共定位。含實驗來源
證據與來源

Nucleus; Nucleus membrane / Peripheral membrane protein / Nucleoplasmic side; Nucleus envelope; Nucleus, nuclear pore complex; Cytoplasm; Cytoplasm, cytoskeleton, spindle; Chromosome, centromere, kinetochore; Nucleus membrane / Peripheral membrane protein / Cytoplasmic side; Detected as discrete intranuclear foci with IFI204 (By similarity). In interphase, localizes to the nucleoplasmic side of the nuclear pore complex (NPC) core structure, forming a fibrous structure called the nuclear basket. Detected exclusively to the cytoplasmic margin of NPC. Docking to the inner nucleoplasmic side of the NPC is mediated through binding to nucleoporins. Anchored by NUP153 to the NPC. The assembly of the NPC is a stepwise process in which Trp-containing peripheral structures assemble after other components, including p62. Detected as filaments that emanate from the nuclear basket of the NPC and extend to the nucleolus to delineate a chromatin-free network extending from the nuclear envelope to the perinucleolar region. Detected in diffuse and discrete spheroidal intranuclear foci. Nucleocytoplasmic shuttling protein imported into the nucleus in a XPO1/CRM1- and Importin alpha/Importin beta receptor-dependent manner. Remains localized to the nuclear membrane after poliovirus (PV) infection. During mitosis, remains associated with the nuclear envelope until prometaphase. Associated with the mitotic spindle from late prometaphase until anaphase. Reorganized during mitosis in a viscous and dynamic nuclear-derived spindle matrix that embeds the microtubule spindle apparatus from pole to pole in a microtubule-independent manner. Recruited to the reforming nuclear envelope during telophase and cytokinesis. Detected at kinetochores during prometaphase. Colocalizes with MAD2L1 in the spindle matrix but not at kinetochore. Colocalizes with dynein, dynactin, tubulin at kinetochore during the metaphase-anaphase transition. Colocalizes with DYNLL1 at the mitotic spindle

PMID 12802065 ↗ · PMID 11514627 ↗ · PMID 11952838 ↗ · PMID 18794356 ↗ · PMID 9024684 ↗ · PMID 9828100 ↗ · PMID 9864356 ↗ · PMID 12424524 ↗ · PMID 7798308 ↗ · PMID 11839768 ↗ · PMID 15229283 ↗ · PMID 18981471 ↗ · PMID 19273613 ↗

開啟資料庫紀錄 ↗

疾病關聯乳突狀甲狀腺癌曾發現涉及 TPR 的染色體異常,其中 TPR 基因的 5′端與 NTRK1 蛋白激酶區域發生染色體內重排,形成融合蛋白 TRK-T1。該融合蛋白約 55 kDa,並可與辨識 NTRK1 羧基末端的抗體反應;此資料描述的是腫瘤中的重排及融合產物。含實驗來源
證據與來源

A chromosomal aberration involving TPR has been found in papillary thyroid carcinomas (PTCs). Intrachromosomal rearrangement that links the 5'-end of the TPR gene to the protein kinase domain of NTRK1 forms the fusion protein TRK-T1. TRK-T1 is a 55 kDa protein reacting with antibodies against the carboxy terminus of the NTRK1 protein

PMID 1532241 ↗

開啟資料庫紀錄 ↗

疾病關聯資料記載 TPR 參與與 MET 的致瘤性重排,但未說明具體重排形式、融合產物或其分子作用細節。含實驗來源
證據與來源

Involved in tumorigenic rearrangements with the MET

PMID 2300559 ↗

開啟資料庫紀錄 ↗

疾病關聯Intellectual developmental disorder, autosomal recessive 79 是自嬰兒期出現的常染色體隱性神經發育疾病,特徵包括整體發展遲緩、嚴重智能障礙、言語能力差或缺失、共濟失調及出生後小頭症。資料指出,影響該基因的變異會造成此疾病。含實驗來源
證據與來源

Intellectual developmental disorder, autosomal recessive 79 MRT79 An autosomal recessive neurodevelopmental disorder apparent from infancy and characterized by global developmental delay, severe intellectual disability, poor or absent speech, ataxia, and postnatal microcephaly. The disease is caused by variants affecting the gene represented in this entry MIM: 620393

PMID 34494102 ↗

開啟資料庫紀錄 ↗

情境矩陣 0 筆 · 一般功能註解 6 筆。互作清單與機器格式紀錄不列入本區。
證據分項判讀,不加總為單一可信度分數。「含實驗來源」依資料庫證據標記辨識;未逐篇核對原始方法的紀錄,不宣稱已完成實驗審查。
12 / SEQUENCE EXPLORER

核酸與蛋白質序列

完整轉錄本 · UTR / CDS 著色 · FASTA
ENST00000367478 · 9,636 nt · GRCh38
依 Ensembl exon 註解拼接的 GRCh38 參考序列,保留非編碼區。
1CTTCGGTCGCGGGCGGTGAGGTGCTGTTGCTGAAACGCTG40
41CCGCTGAGGGTGGACTCGATTTCCCAGGGTCCCGCCGCGG80
81GAGTCTCCGGCGGGCGGGCGCGCGCGAGCCACCGAGCGAG120
121GTGATAGAGGCGGCGGCCCAGGCGTCTGGGTCCTGCTGGT160
161CTTCGCCTTTCTTCTCCGCTTCTACCCCGTCGGCCGCTGC200
201CACTGGGGTCCCTGGCCCCACCGACATGGCGGCGGTGTTG240
241CAGCAAGTCCTGGAGCGCACGGAGCTGAACAAGCTGCCCA280
281AGTCTGTCCAGAACAAACTTGAAAAGTTCCTTGCTGATCA320
321GCAATCCGAGATCGATGGCCTGAAGGGGCGGCATGAGAAA360
361TTTAAGGTGGAGAGCGAACAACAGTATTTTGAAATAGAAA400
401AGAGGTTGTCCCACAGTCAGGAGAGACTTGTGAATGAAAC440
441CCGAGAGTGTCAAAGCTTGCGGCTTGAGCTAGAGAAACTC480
481AACAATCAACTGAAGGCACTAACTGAGAAAAACAAAGAAC520
521TTGAAATTGCTCAGGATCGCAATATTGCCATTCAGAGCCA560
561ATTTACAAGAACAAAGGAAGAATTAGAAGCTGAGAAAAGA600
601GACTTAATTAGAACCAATGAGAGACTATCTCAAGAACTTG640
641AATACTTAACAGAGGATGTTAAACGTCTGAATGAAAAACT680
681TAAAGAAAGCAATACAACAAAGGGTGAACTTCAGTTAAAA720
721TTGGATGAACTTCAAGCTTCTGATGTTTCTGTTAAGTATC760
761GAGAAAAACGCTTGGAGCAAGAAAAGGAATTGCTACATAG800
801TCAGAATACATGGCTGAATACAGAGTTGAAAACCAAAACT840
841GATGAACTTCTGGCTCTTGGAAGAGAAAAAGGGAATGAGA880
881TTCTAGAGCTTAAATGTAATCTTGAAAATAAAAAAGAAGA920
921GGTTTCTAGACTGGAAGAACAAATGAATGGCTTAAAAACA960

cDNA 使用 DNA 字母 T;mRNA 模式改以 U 顯示。轉錄本保留已註解的非編碼區,未另外加入 poly(A) 尾;非編碼 RNA 的參考轉錄本也可能仍需後續加工。數字為所選序列的 1-based 位置。長序列以黃色捲軸瀏覽,可複製或下載完整轉錄本與蛋白質;基因組 DNA 隨捲動取得所需範圍。