基因總覽
TJP1 是蛋白質編碼基因,產物 tight junction protein 1 屬於 MAGUK 家族,並與 TJP2、TJP3 為密切相關的支架蛋白。它的主要角色是組織緊密連接相關的分子結構:可將 claudins、junctional adhesion molecules 與 occludin 等跨膜蛋白,連結至 actin 細胞骨架。這種支架性質使 TJP1 能參與細胞連接處的組織與穩定;其蛋白質結構包含多個 PDZ 結構域及其他已註解區域,支持其與不同分子建立連結。
基因異名與舊稱
異名取自 HGNC,可能包含歷史名稱;蛋白質名稱以 UniProt 註解為準。
染色體位置與基因結構
查看實際轉錄本與 exon 註解
| Transcript | Genomic coordinates | Exons |
|---|---|---|
| ENST00000614355 ★ | 29,700,152–29,822,468 | 28 |
| ENST00000346128 | 29,699,167–29,822,503 | 28 |
| ENST00000400011 | 29,699,167–29,821,548 | 28 |
| ENST00000356107 | 29,699,167–29,969,078 | 29 |
| ENST00000677774 | 29,699,167–29,822,077 | 27 |
| ENST00000900272 | 29,699,167–29,822,470 | 26 |
| ENST00000934390 | 29,699,167–29,822,508 | 26 |
| ENST00000934391 | 29,699,167–29,822,507 | 26 |
| ENST00000934392 | 29,699,167–29,822,503 | 28 |
| ENST00000934393 | 29,699,167–29,822,498 | 26 |
| ENST00000934394 | 29,699,167–29,822,488 | 28 |
| ENST00001082886 | 29,699,167–29,822,488 | 28 |
顯示 12/18 個蛋白質編碼轉錄本;canonical 優先。
帶型與著絲點依 Ensembl 座標繪製;核染色體長度以 GRCh38 第 1 號染色體為共同尺度。黃色標記表示本基因位置,細小區間加粗以利辨識;實際基因長度與 exon 見下方資料。
分子功能與生物學過程
TJP1 與 TJP2、TJP3 是密切相關的支架蛋白,可將緊密連接(tight junction)的跨膜蛋白,如 claudins、junctional adhesion molecules 和 occludin,連結至 actin 細胞骨架。TJP1 也可形成多股的 TJP1/ZO1 凝聚體,並延伸成緊密連接帶;依相似性推定,這條連接帶透過與 PATJ 的作用錨定於細胞頂端膜。緊密連接可限制物質經細胞旁空間移動,並在上皮與內皮細胞中,維持頂端和基底外側質膜區域的組成差異。
TJP1 對腔體形成是必要的,尤其有助於上皮細胞極化及屏障形成的效率;這些作用亦依相似性推定。除細胞連接外,TJP1 還參與細胞移動調節:它可將 CDC42BPB 定位至移動中細胞的前緣。TJP1 也參與 podosome 的形成及相關功能,因而調節細胞黏附與基質重塑。
TJP1 與 TJP2、TJP3 共同參與轉錄因子 DBPA 在細胞連接處的滯留與穩定,但不參與 DBPA 進入細胞核的轉運。另有依相似性提出的可能作用:TJP1 或可透過其在緊密連接中的角色,參與 ameloblast 分化期間的細胞形態變化。
Promoter 與基因調控
>TJP1 ENST00000614355 GRCh38 chr15:29822368-29823468 strand=-1 5′→3′ 相對 TSS:-1000 到 +100 bp;1101 bp 依轉錄本 TSS 擷取的基因組序列;TSS = 0,兩端包含,未驗證為 promoter TTAAAGATGTTATCATTGATGTTACTAAGGATTTCTGGCATTTTTTGAAGACCTTTACATTTACAAGTGT AGATTAGTGAGTCTAGGATTGGTTTCTTACCATGTTCCTTGGTGTTTAGCAAAGCCGTCAACATTGTGGG AAGTTTGTGTAGTGGCTGATTAAACTGGACCATGGACTGCACGTGTTTACACCCTTTTCTGCCCAACTTT GAGTTGGAGGGACAGCATTGGAATGCAGGGCAGCTTGACCCGTTCGGTCAACAAGAATTTCAGCAATCTT GATGGCCAAAAATAAACTTTTCAAGATTCCTGTCTAGATGGGCGGGAAAGAGACTTTGGATATATCTTGA GGTCTAATGTGGGGTGTGGGCCGAGATGTCACAGGTCTCTAGGGTGTTTCTCAGGCTGCTGCCTCCGGGT GCCCATGACCTCATCACCAGTTTCAGCCTTGGCAGTCGGCGCCGGTGAACGAGAGCAACGCTTCTGACCC TGCCGGAGCTCCTCGGAGATGAAAGCCATGACGCGCCTTGCAGAAAATGCATTCCGCCTTCCGTGGGAAC AACGCCGAGGCACGCGGTGACAGCCGTGACCATGCTGTTTGCCCAGTGAAGGAAACAACTGTCGGGTATC GGCTCTGCCGGCCTTTCCAGCCGCACTCATGCATGGGGCTCACCCCATGATGTGCGTGGCTTGTCGAGGA GCAAGTGGACAAGTCTCTTAAGGAAAGCTTTGGTGCACAGGCGCTTTCTCCTTGGGGGCGAATTCTGCCA GACCTTGGATAAAAACAAACAGGAAGACTCGCACGGCAGCGGAAACTGTCTTCCAAGTTACTTGGGTTAC CCGGCTTTTCCTTCCGCGCTTGGGGTCGGGACCCCGGCCGCTCGTCCCGCCCCCTCCCCCGCCGCGGCCC CGCCCCCTCCCCGCCTCGCCTCGCCTCGCCTCGTCCAGCCCCGCCCCCGCCGGGCCGGGCATGCTCAGTG GGCCGGGCCGGCAGGTTTGCGTGGCCGCTGAGTTGCCGGCGCCGGCTGAGCCAGCGGACGCCGCGTTCCT TGGCGGCCGCCGGTTCCCGGGAAGTTACGTGGCGAAGCCGGCTTCCGAGGA
EPDnew 實驗支持 promoter/TSS · 3 筆
| EPDnew ID | TSS(1-based) | 股向 | 來源顯示區間 |
|---|---|---|---|
| TJP1_3 ↗ | 15:29,821,479 | 負股 | 29,821,469–29,821,528 |
| TJP1_1 ↗ | 15:29,822,459 | 負股 | 29,822,449–29,822,508 |
| TJP1_2 ↗ | 15:29,968,909 | 負股 | 29,968,899–29,968,958 |
EPDnew human v006 · UCSC hg38,GRCh38/hg38,透過 UCSC 取得。TSS 具有 CAGE/RAMPAGE 等實驗資料支持;任意擷取的上下游區間仍需另行判讀調控功能,不能視為整段皆經功能驗證。
EPD 封存狀態 ↗ · UCSC 資料說明 ↗ · EPD team, SIB Swiss Institute of Bioinformatics; UCSC Genome Browser · CC BY 4.0
查看已取得的調控/motif 註解
ENSR15_8TN4Z · enhancer · 29818243–29818457 · regulatory
ENSR15_9FSKQ · enhancer · 29820803–29821071 · regulatory
ENSR15_9FSKT · enhancer · 29821241–29821537 · regulatory
ENSR15_C4XW9 · promoter · 29821538–29822641 · regulatory
ENSR15_592DFZ · CTCF_binding_site · 29821596–29821617 · regulatory
ENSR15_B7WRN · enhancer · 29822642–29823615 · regulatory
ENSR15_9FSM3 · enhancer · 29825236–29825706 · regulatory
ENSR15_8TNB5 · enhancer · 29827118–29827312 · regulatory
· motif · 29821598–29821614 · motif
· motif · 29823282–29823291 · motif
· motif · 29823282–29823291 · motif
· motif · 29823284–29823300 · motif
· motif · 29823284–29823300 · motif
· motif · 29823290–29823305 · motif
· motif · 29825356–29825364 · motif
· motif · 29825430–29825438 · motif
· motif · 29825466–29825483 · motif
· motif · 29825468–29825483 · motif
· motif · 29826302–29826311 · motif
· motif · 29826302–29826311 · motif
蛋白質結構域與序列
參考蛋白質長度:1748 aa
tight junction protein 1 長 1,748 個胺基酸,屬於 MAGUK 家族。已註解的結構包含三個 PDZ 結構域、SH3 結構域、類 guanylate kinase 結構域及 C 端 ZU5 結構域;另有 occludin 結合區域與 actin 結合區域(ABR)。序列中亦註解出多段無序區域。
蛋白質三維結構
細胞內定位
TJP1 位於細胞膜內側、細胞連接與 podosome。 細胞彼此接觸時,它會同步由細胞質移至細胞膜;形成連接時,TJP1 可組成緊密連接帶,並依相似性推定經 PATJ 錨定於頂端膜。 在 podosome 中,TJP1 主要位於包圍 actin 核心的環狀結構;在人類腸上皮細胞的細胞接觸處,則與 SPEF1 共定位。
深綠色圓點:來源記載的蛋白質定位;數量不表示含量。
未繪示構造:Cell junction, tight junction;Cell junction;Cell junction, gap junction;Cell projection, podosome。這些構造未在通用細胞圖中標點,仍保留來源定位名稱。
動物細胞結構示意;器官大小與數量不按比例。點選細胞構造可查看定位註解。
交互作用與訊號網絡
拖曳節點後放開可帶動位置變化;點選夥伴查看證據。位置與連線長度不代表結合強度,圖中未推定夥伴彼此之間的關係。
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TJP1 可形成同源二聚體,也與 TJP3、TJP2 分別形成異源二聚體;與 TJP2 的異源二聚作用涉及雙方的 PDZ2 結構域。它也與 OCLN、claudins、CGN/cingulin、CXADR、GJA12、GJD3、UBN1 等分子互作,並透過 ABR 區域與 F-actin 結合。其他具區域特異性的互作包括:ZU5 結構域與 CDC42BPB、MYZAP,PDZ 結構域與 GJA1,以及 C 端區域與 USP53。TJP1 與 PATJ 的互作有助於其凝聚體沿頂端細胞界面附著及延伸;與 PKP1 的互作則促進 TJP1/ZO-1 定位至質膜。
疾病與遺傳關聯
Contextual Functional Evidence Matrix
矩陣以「功能主張」為列,以細胞情境、干預條件、量測結果與證據來源為欄,方便比較同一功能在不同條件下的支持情形。只有含情境與實驗資訊的紀錄會列入矩陣;一般功能註解另列於下方。
功能註解總覽 · 3 筆
| 功能面向 | 功能敘述 | 證據類型 | 可查核來源 |
|---|---|---|---|
| 功能 | TJP1 與 TJP2、TJP3 是密切相關的支架蛋白,可連結緊密連接跨膜蛋白與 actin 細胞骨架。TJP1 凝聚體可延伸成緊密連接帶;緊密連接限制細胞旁物質移動並區隔膜區域。TJP1 亦參與上皮腔體形成、極化與屏障形成、細胞移動、podosome 功能及 DBPA 在連接處的滯留;其參與 ameloblast 分化形態變化的可能性為依相似性推定。 | 含實驗來源 | 證據與來源TJP1, TJP2, and TJP3 are closely related scaffolding proteins that link tight junction (TJ) transmembrane proteins such as claudins, junctional adhesion molecules, and occludin to the actin cytoskeleton. Forms a multistranded TJP1/ZO1 condensate which elongates to form a tight junction belt, the belt is anchored at the apical cell membrane via interaction with PATJ (By similarity). The tight junction acts to limit movement of substances through the paracellular space and as a boundary between the compositionally distinct apical and basolateral plasma membrane domains of epithelial and endothelial cells. Necessary for lumenogenesis, and particularly efficient epithelial polarization and barrier formation (By similarity). Plays a role in the regulation of cell migration by targeting CDC42BPB to the leading edge of migrating cells. Plays an important role in podosome formation and associated function, thus regulating cell adhesion and matrix remodeling. With TJP2 and TJP3, participates in the junctional retention and stability of the transcription factor DBPA, but is not involved in its shuttling to the nucleus (By similarity). May play a role in mediating cell morphology changes during ameloblast differentiation via its role in tight junctions (By similarity) PMID 20930113 ↗ · PMID 21240187 ↗ |
| 交互作用 | TJP1 可形成同源二聚體,並與 TJP2、TJP3 形成異源二聚體,也與多種緊密連接及細胞骨架相關分子互作。互作涉及特定區域,包括 ZU5、PDZ、ABR 及 C 端;TJP1 與 PATJ 的結合有助凝聚體沿頂端細胞界面附著和延伸,與 PKP1 的結合則促進其定位至質膜。部分互作依相似性推定。 | 含實驗來源 | 證據與來源Homodimer. Forms heterodimers TJP3 (By similarity). Forms a heterodimer (via PDZ2 domain) with TJP2/ZO2 (via PDZ2 domain). Interacts with OCLN, CALM, claudins, CGN/cingulin, CXADR, GJA12, GJD3 and UBN1. Interacts (via ZU5 domain) with CDC42BPB and MYZAP. Interacts (via PDZ domain) with GJA1. Interacts (via PDZ domains) with ANKRD2. Interacts with POPDC1 (via the C-terminus cytoplasmic tail) (By similarity). Interacts with HSPA4 and KIRREL1 (By similarity). Interacts with DLL1 (By similarity). Interacts with USP53 (via the C-terminal region) (By similarity). Interacts (via ABR region) with F-actin. Interacts with DNMBP (via C-terminal domain); required for the apical cell-cell junction localization of DNMBP. Interacts with SPEF1. Interacts (via N-terminus) with CTNNA1 (By similarity). Interacts with CLDN18 (By similarity). Interacts with CLDN16 (via TRV motif); this is a prerequisite for anchoring of CLDN16 at the tight junction. Interacts with PKP1; the interaction facilitates TJP1/ZO-1 localization to the plasma membrane (By similarity). Interacts with PATJ (via PDZ1-6 domains); the interaction is required for attachment and extension of TJP1/ZO1 condensates along the apical cell interface (By similarity) PMID 11734628 ↗ · PMID 12023291 ↗ · PMID 12154091 ↗ · PMID 12354695 ↗ · PMID 15183511 ↗ · PMID 16737969 ↗ · PMID 17015620 ↗ · PMID 17897942 ↗ · PMID 17928286 ↗ · PMID 18636092 ↗ · PMID 18823282 ↗ · PMID 20093627 ↗ · PMID 20200156 ↗ · PMID 20930113 ↗ · PMID 21240187 ↗ · PMID 22016770 ↗ · PMID 31473225 ↗ · PMID 9792688 ↗ |
| 細胞定位 | TJP1 位於細胞膜內側、細胞連接及 podosome,並會在細胞接觸時由細胞質移至細胞膜。連接形成期間,它構成與緊密連接相連的蛋白帶,依相似性推定透過 PATJ 錨定於頂端膜;在 podosome 則主要位於 actin 核心周圍的環狀結構。於腸上皮細胞接觸處,TJP1 與 SPEF1 共定位。 | 含實驗來源 | 證據與來源Cell membrane / Peripheral membrane protein / Cytoplasmic side; Cell junction, tight junction; Cell junction; Cell junction, gap junction; Cell projection, podosome; Moves from the cytoplasm to the cell membrane concurrently with cell-cell contact. Forms a condensed tight junction-linked belt of protein during junction formation which becomes anchored to the apical cell membrane via interaction with PATJ (By similarity). At podosomal sites, is predominantly localized in the ring structure surrounding the actin core. Colocalizes with SPEF1 at sites of cell-cell contact in intestinal epithelial cells PMID 7798316 ↗ · PMID 28169360 ↗ · PMID 20930113 ↗ |
核酸與蛋白質序列
GTGGCCGCTGAGTTGCCGGCGCCGGCTGAGCCAGCGGACG40CCGCGTTCCTTGGCGGCCGCCGGTTCCCGGGAAGTTACGT80GGCGAAGCCGGCTTCCGAGGAGACGCCGGGAGGCCACGGG120TGCTGCTGACGGGCGGGCGACCGGGCGAGGCCGACGTGGC160CGGGCTGCGAAAGCTGCGGGAGGCCGAGTGGGTGGCCGCG200CTCGGAGGGAGGTGCCGGTCGGGCGCGCCCCGTGGAGAAG240ACCCGGGCGGGGCGGGCGCTTCCCGGACTTTTGTCCGAGT280TGAATTCCCTCCCCCTGGGCCGGGCCCTTCCGGCCGCCCC320CGCCCGTGCCCCGCTCGCTCTCGGGAGATGTTTATTTGGG360CTGTGGCGTGAGGAGCGGGCGGGCCAGCGCCGCGGAGTTT400CGGGTCCGAGGAGCCTCGCGCGGCGCTGGAGAGAGACAAG440ATGTCCGCCAGAGCTGCGGCCGCCAAGAGCACAGCAATGG480AGGAAACAGCTATATGGGAACAACATACAGTGACGCTTCA520CAGGGCTCCTGGATTTGGATTTGGAATTGCAATATCTGGT560GGACGAGATAATCCTCATTTTCAGAGTGGGGAAACGTCAA600TAGTGATTTCAGATGTGCTGAAAGGAGGACCAGCTGAAGG640ACAGCTACAGGAAAATGACCGAGTTGCAATGGTTAACGGA680GTTTCAATGGATAATGTTGAACATGCTTTTGCTGTTCAGC720AACTAAGGAAAAGTGGGAAAAATGCAAAAATTACAATTAG760AAGGAAGAAGAAAGTTCAAATACCAGTAAGTCGTCCTGAT800CCTGAACCAGTATCTGATAATGAAGAAGATAGTTATGATG840AGGAAATACATGATCCAAGAAGTGGCCGGAGTGGTGTGGT880TAACAGAAGGAGTGAGAAGATTTGGCCGAGGGATAGAAGT920GCAAGTAGAGAGAGGAGCTTGTCCCCGCGGTCAGACAGGC960cDNA 使用 DNA 字母 T;mRNA 模式改以 U 顯示。轉錄本保留已註解的非編碼區,未另外加入 poly(A) 尾;非編碼 RNA 的參考轉錄本也可能仍需後續加工。數字為所選序列的 1-based 位置。長序列以黃色捲軸瀏覽,可複製或下載完整轉錄本與蛋白質;基因組 DNA 隨捲動取得所需範圍。