基因總覽
SORL1 是蛋白質編碼基因,產生的 sortilin related receptor 1 屬於 VPS10-related sortilin family 的 SORL1 subfamily。這是一種大型單次穿膜的第一型膜蛋白,具有長段腔內區域、單一跨膜區與短胞質尾端。其胞外部分包含 VPS10p domain、LDL-receptor class A repeats、LDL-receptor class B repeats,以及多個 Fibronectin type-III domains;胞質端則帶有與細胞內分選相關的區域。這些結構特色使 SORL1 能作為分選受體,協助不同蛋白質在細胞內不同區室間運送。
基因異名與舊稱
異名取自 HGNC,可能包含歷史名稱;蛋白質名稱以 UniProt 註解為準。
染色體位置與基因結構
查看實際轉錄本與 exon 註解
| Transcript | Genomic coordinates | Exons |
|---|---|---|
| ENST00000260197 ★ | 121,452,314–121,633,763 | 48 |
| ENST00000905166 | 121,451,581–121,633,763 | 48 |
| ENST00000905167 | 121,451,581–121,633,763 | 47 |
| ENST00001002979 | 121,451,581–121,633,763 | 47 |
| ENST00001049554 | 121,451,581–121,633,763 | 47 |
| ENST00001107528 | 121,451,581–121,570,904 | 23 |
| ENST00001107530 | 121,451,581–121,523,627 | 11 |
| ENST00001118389 | 121,451,581–121,569,934 | 23 |
| ENST00001118390 | 121,451,581–121,562,454 | 22 |
| ENST00001144061 | 121,451,581–121,633,763 | 48 |
| ENST00000525532 | 121,566,725–121,633,763 | 28 |
| ENST00000532694 | 121,576,760–121,633,763 | 25 |
顯示 12/14 個蛋白質編碼轉錄本;canonical 優先。
帶型與著絲點依 Ensembl 座標繪製;核染色體長度以 GRCh38 第 1 號染色體為共同尺度。黃色標記表示本基因位置,細小區間加粗以利辨識;實際基因長度與 exon 見下方資料。
分子功能與生物學過程
SORL1 是細胞內分選受體,可協助多種蛋白質前往適當位置;它也與 AP-1 complex 共同參與 Golgi apparatus 與胞內體間的分選。不同貨物的運送結果並不相同,可能是保留、回收、送往溶酶體降解,或調整其在細胞表面的數量,因此會影響相關受體訊號與蛋白質代謝。
對 APP 而言,SORL1 將其保留於 trans-Golgi network,減少 APP 經過晚期胞內體;該處是產生 Abeta40 與 Abeta42 的位置。因此,SORL1 可調節 APP 的細胞內運輸及其生成 amyloidogenic-beta peptides 的處理過程。它也可能將新生成的 amyloid-beta peptides 分送至溶酶體分解。來源指出,SORL1 不影響 APP 從內質網運送至 Golgi compartments 的過程。
SORL1 亦調整多種受體的所在位置與回收。它促進 NTRK2/TRKB 在突觸質膜、突觸後密度與細胞體間運輸,因而正向調節 BDNF 訊號。對 INSR,SORL1 協助內吞後的受體經 Golgi apparatus 回到細胞表面,減少其遭溶酶體分解,提升細胞表面 INSR 並增強脂肪組織對胰島素訊號的接收;它不影響 INSR 的內吞。SORL1 也促進 ERBB2/HER2 由胞內體回收至質膜,進而刺激 PI3K 依賴的訊號;在 ERBB2 依賴型癌細胞中,這與細胞增殖增加相關。
在 GDNF 路徑中,SORL1 促進受 GDNF 調控的分泌,但不影響構成性分泌;它也將 GDNF-GFRA1 複合體由細胞表面送往胞內體,使 GDNF 接著進入溶酶體降解,而 GFRA1 回到細胞膜。此分選形成 GDNF 清除途徑,並可使 RET 內吞但不被降解,影響 GDNF 誘發的神經營養活性。對脂蛋白脂肪酶 LPL,SORL1 則促進其進入胞內體並進一步送往溶酶體,造成新合成 LPL 降解;APOA5 也可能由 SORL1 分送至胞內體,其中部分送往溶酶體,部分轉至 trans-Golgi network。
SORL1 還與代謝及細胞行為相關。它可能透過細胞內分選 STK39 與 PPP3CB,參與腎臟離子恆定及 SLC12A1/NKCC2 的磷酸化調控;其 N-terminal ectodomain 可抑制 BMP/Smad pathway,負向調節脂肪組織能量消耗。它也可能藉由提高 uPAR/PLAUR 的細胞表面表現,促進平滑肌細胞增殖與遷移;此外,SORL1 參與單核球黏附,以及缺氧時造血幹細胞與前驅細胞對骨髓基質細胞的黏附。對 CLCF1-CRLF1-CNTFR 複合體及 IL6 訊號的調節則分別被描述為可能透過內吞與溶酶體降解,以及改變 cis 與 trans signaling。
Promoter 與基因調控
>SORL1 ENST00000260197 GRCh38 chr11:121451314-121452414 strand=1 5′→3′ 相對 TSS:-1000 到 +100 bp;1101 bp 依轉錄本 TSS 擷取的基因組序列;TSS = 0,兩端包含,未驗證為 promoter GGTTCAGAGAGTTTGGCTCGTCAAGCTGAATGTAGGGTTAAAGTGTGTCCTCCCTCCTCTGTGGGTGTTT GCCTAGCTCCTGGCTGTGGGTTGAAGGGACTGGTAAATATGTCTATTTTACTGCTGAGGCAGGGTGGCTC AGTGCTTGGTCACCTTGGAGGGATCATAAGCAAGCCGCCGCTGGGGCCCTGTGCCACGCACAGGTATTCA TGCGTGCGTGCAAGCACACCCTGTATAGCTGTGTAATAATTGTCCAGGTGTGGTGCATTCTTTGTCAGAT GTACCCTTGTTTTTACTGCCTCTGTGCAGGATGTTTATTTGCTGTGCTTCAGGCTGGGGCACGTAGCTTG ATCAAGGGTAGTTTTTGCTGTGGCCCCTGCAAATACGTTGTGGTGCCCAGAGTAGATGAAAAACTGTGAG TTTCCCAATAGAGCGGGTTCATCTGGACTCTTGTTGGTTGCGTTCTAGGAGCTAATTCTGTGGCTCTGGA CTCTTCCCTGGAGGTGGGGATGAGGCCGGGGCCGGGGGGAGGTGGTCTTGTGGCGCTACTGCGGGCTGTG CACTCAGGAAAGTGGCCACGGTTTAGGACGACCTCGACACGACCCTGTATAGGACGCAACTAACTCCAGA GAAAACGAGCGAGCCCCATGCAACTCTTCATTCCTGCAGGGAGAACAAGGAGGTGTGCCCGCCAGGGAAG GGACGCACCCCCACCGGCGCTCGCTGCCTTAACTTCCCCATCCCCGCGCCAGGGAGGGGCCGGAGTCGCC GCCGAGGCCGCCGAGCGCAGAAAGTGCGCGAAAGGGACGCGCTGCGAGCCTCACACGTGACGGCGCCGCG CCGAACCGAGCGGGACCTGGCGGCAGCGGCGGCGGGCGCAGCGGGGCGGCCCGGAGCGGCGCGGGCGGCC TGGAGCCCCGGGAGCGGCGCGCGCGGTCCCGGCCCAGCGGCTCTCCTGGCCTCGCGCTGCACATTCTCTC CTGGCGGCGGCGCCACCTGCAGTAGCGTTCGCCCGAACATGGCGACACGGAGCAGCAGGAGGGAGTCGCG ACTCCCGTTCCTATTCACCCTGGTCGCACTGCTGCCGCCCGGAGCTCTCTG
EPDnew 實驗支持 promoter/TSS · 2 筆
| EPDnew ID | TSS(1-based) | 股向 | 來源顯示區間 |
|---|---|---|---|
| SORL1_2 ↗ | 11:121,452,161 | 正股 | 121,452,112–121,452,171 |
| SORL1_1 ↗ | 11:121,452,320 | 正股 | 121,452,271–121,452,330 |
EPDnew human v006 · UCSC hg38,GRCh38/hg38,透過 UCSC 取得。TSS 具有 CAGE/RAMPAGE 等實驗資料支持;任意擷取的上下游區間仍需另行判讀調控功能,不能視為整段皆經功能驗證。
EPD 封存狀態 ↗ · UCSC 資料說明 ↗ · EPD team, SIB Swiss Institute of Bioinformatics; UCSC Genome Browser · CC BY 4.0
查看已取得的調控/motif 註解
ENSR11_CG3DD · enhancer · 121448387–121449596 · regulatory
ENSR11_533K9JJ · CTCF_binding_site · 121448699–121448720 · regulatory
ENSR11_533K9NS · CTCF_binding_site · 121449622–121449643 · regulatory
ENSR11_93R7JZ · enhancer · 121450464–121450921 · regulatory
ENSR11_CG3DK · enhancer · 121451043–121452152 · regulatory
ENSR11_85KF5T · promoter · 121452153–121452324 · regulatory
ENSR11_533KB67 · CTCF_binding_site · 121452300–121452321 · regulatory
ENSR11_BW4RC · promoter · 121452957–121453502 · regulatory
ENSR11_BW4RG · enhancer · 121453744–121454264 · regulatory
· motif · 121448419–121448431 · motif
· motif · 121448421–121448428 · motif
· motif · 121448638–121448651 · motif
· motif · 121448650–121448665 · motif
· motif · 121448650–121448665 · motif
· motif · 121448655–121448667 · motif
· motif · 121448701–121448717 · motif
· motif · 121448788–121448801 · motif
· motif · 121449339–121449352 · motif
· motif · 121449424–121449446 · motif
· motif · 121449424–121449446 · motif
· motif · 121449624–121449640 · motif
· motif · 121450574–121450587 · motif
· motif · 121450791–121450802 · motif
· motif · 121451171–121451184 · motif
· motif · 121451171–121451185 · motif
· motif · 121451347–121451360 · motif
· motif · 121451347–121451362 · motif
· motif · 121451528–121451543 · motif
· motif · 121451528–121451543 · motif
· motif · 121451991–121452000 · motif
· motif · 121452079–121452096 · motif
· motif · 121452135–121452144 · motif
· motif · 121452135–121452144 · motif
· motif · 121452248–121452264 · motif
· motif · 121452302–121452318 · motif
· motif · 121452670–121452683 · motif
· motif · 121453041–121453063 · motif
· motif · 121453041–121453063 · motif
· motif · 121453156–121453167 · motif
· motif · 121453296–121453307 · motif
· motif · 121453415–121453428 · motif
· motif · 121453524–121453535 · motif
· motif · 121453679–121453693 · motif
· motif · 121453784–121453799 · motif
· motif · 121453840–121453852 · motif
· motif · 121454021–121454031 · motif
· motif · 121454027–121454042 · motif
· motif · 121454878–121454891 · motif
· motif · 121455251–121455263 · motif
· motif · 121455336–121455349 · motif
· motif · 121455339–121455351 · motif
· motif · 121455355–121455370 · motif
· motif · 121455775–121455787 · motif
· motif · 121455777–121455784 · motif
· motif · 121455777–121455792 · motif
· motif · 121456676–121456687 · motif
· motif · 121456677–121456688 · motif
· motif · 121457231–121457242 · motif
SORL1 表現可受 morphogenetic neuropeptide(亦稱 head activator 或 HA)上調。在造血幹細胞與前驅細胞中,缺氧也會提高 SORL1 表現;此調控可能由 HIF1A 誘導轉錄所介導。
蛋白質結構域與序列
參考蛋白質長度:2214 aa
sortilin related receptor 1 長 2,214 個胺基酸,N 端含訊號胜肽,主要腔內區域之後接單次跨膜螺旋與短胞質端。腔內區包含 VPS10p domain、10-bladed beta-propeller、兩個 10CC cysteine-knot 區域、LDL-receptor class B repeats、LDL-receptor class A domains,以及六個 Fibronectin type-III domains。胞質端末段對 Golgi apparatus 至胞內體分選及 GGA1、GGA2 互作很重要。
蛋白質三維結構
細胞內定位
SORL1 主要位於細胞內,尤其是 trans-Golgi network、胞內體及胞內體回到 Golgi 的逆向運輸囊泡;質膜上的量較低。 全長蛋白在細胞表面可部分經 clathrin 依賴的方式內吞。 表面蛋白也可被切割釋出胞外 ectodomain;之後剩餘跨膜片段可再受 PSEN1 切割,其胞質端片段會進入細胞核。
深綠色圓點:來源記載的蛋白質定位;數量不表示含量。
細胞外定位:圓點散佈於細胞周圍,與細胞膜保持距離。
動物細胞結構示意;器官大小與數量不按比例。點選細胞構造可查看定位註解。
交互作用與訊號網絡
拖曳節點後放開可帶動位置變化;點選夥伴查看證據。位置與連線長度不代表結合強度,圖中未推定夥伴彼此之間的關係。
更多交互作用夥伴 · 已取得 22 個夥伴
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- GFRA1P56159-2 · UniProt INTERACTION · 3 experiments
- GGA1Q9UJY5 · UniProt INTERACTION · 4 experiments
- GGA2Q9UJY4 · UniProt INTERACTION · 5 experiments
- HSPA12AO43301 · UniProt INTERACTION · 5 experiments
- IL6P05231 · UniProt INTERACTION · 4 experiments
- IL6RP08887 · UniProt INTERACTION · 7 experiments
- KAT5Q92993 · UniProt INTERACTION · 3 experiments
- LRPAP1P30533 · UniProt INTERACTION · 5 experiments
- NDUFV2P19404 · UniProt INTERACTION · 3 experiments
- PNPP00491 · UniProt INTERACTION · 3 experiments
- POU6F2P78424 · UniProt INTERACTION · 3 experiments
- RHOHQ15669 · UniProt INTERACTION · 3 experiments
- VPS29Q8N0S8 · UniProt INTERACTION · 3 experiments
- Gfra1Q62997 · UniProt INTERACTION · 5 experiments
SORL1 與多種貨物及分選因子有實體互作。例如,它可與 APP 形成 1:1 複合體,也可結合 GDNF、GFRA1、INSR、ERBB2/HER2、LPL、APOA5、NTRK2/TRKB 與 IL6;部分互作會改變這些分子的運輸或內吞。其胞質端與 GGA1、GGA2、AP-1、AP-2 及 PACS1 互作,涉及細胞內分選。成熟切割後,SORL1 的 N 端也會與自身 propeptide 互作,並抑制其與包括 CRLF1、GDNF、GFRA1、IL6 和 IL6R 在內配體的互作。與受體訊號或細胞行為相關的功能不必然代表直接結合。
疾病與遺傳關聯
SORL1 可能參與 Alzheimer disease 的致病過程,但此描述並未指出 SORL1 與疾病之間的因果關係。Alzheimer disease 的特徵包括認知能力逐步喪失,以及 amyloid 蛋白沉積;斑塊主要成分 amyloid-beta 40 與 amyloid-beta 42 由跨膜蛋白 APP 蛋白水解產生。SORL1 調節 APP 的細胞內運輸與處理,來源將此功能與 amyloid-beta 生成相關聯。
Contextual Functional Evidence Matrix
矩陣以「功能主張」為列,以細胞情境、干預條件、量測結果與證據來源為欄,方便比較同一功能在不同條件下的支持情形。只有含情境與實驗資訊的紀錄會列入矩陣;一般功能註解另列於下方。
功能註解總覽 · 5 筆
| 功能面向 | 功能敘述 | 證據類型 | 可查核來源 |
|---|---|---|---|
| 功能 | SORL1 是細胞內蛋白質分選受體,調節 APP、NTRK2、GDNF-GFRA1、ERBB2、LPL、INSR 等貨物的運送與處理;部分機制為可能或相似性推論,且各貨物的運輸結果不同。 | 含實驗來源 | 證據與來源Sorting receptor that directs several proteins to their correct location within the cell (Probable). Along with AP-1 complex, involved Golgi apparatus - endosome sorting. Sorting receptor for APP, regulating its intracellular trafficking and processing into amyloidogenic-beta peptides. Retains APP in the trans-Golgi network, hence preventing its transit through late endosomes where amyloid beta peptides Abeta40 and Abeta42 are generated. May also sort newly produced amyloid-beta peptides to lysosomes for catabolism. Does not affect APP trafficking from the endoplasmic reticulum to Golgi compartments. Sorting receptor for the BDNF receptor NTRK2/TRKB that facilitates NTRK2 trafficking between synaptic plasma membranes, postsynaptic densities and cell soma, hence positively regulates BDNF signaling by controlling the intracellular location of its receptor. Sorting receptor for GDNF that promotes GDNF regulated, but not constitutive secretion. Sorting receptor for the GDNF-GFRA1 complex, directing it from the cell surface to endosomes. GDNF is then targeted to lysosomes and degraded, while its receptor GFRA1 recycles back to the cell membrane, resulting in a GDNF clearance pathway. The SORL1-GFRA1 complex further targets RET for endocytosis, but not for degradation, affecting GDNF-induced neurotrophic activities. Sorting receptor for ERBB2/HER2. Regulates ERBB2 subcellular distribution by promoting its recycling after internalization from endosomes back to the plasma membrane, hence stimulating phosphoinositide 3-kinase (PI3K)-dependent ERBB2 signaling. In ERBB2-dependent cancer cells, promotes cell proliferation. Sorting receptor for lipoprotein lipase LPL. Promotes LPL localization to endosomes and later to the lysosomes, leading to degradation of newly synthesized LPL. Potential sorting receptor for APOA5, inducing APOA5 internalization to early endosomes, then to late endosomes, wherefrom a portion is sent to lysosomes and degradation, another portion is sorted to the trans-Golgi network. Sorting receptor for the insulin receptor INSR. Promotes recycling of internalized INSR via the Golgi apparatus back to the cell surface, thereby preventing lysosomal INSR catabolism, increasing INSR cell surface expression and strengthening insulin signal reception in adipose tissue. Does not affect INSR internalization. Plays a role in renal ion homeostasis, controlling the phospho-regulation of SLC12A1/NKCC2 by STK39/SPAK kinase and PPP3CB/calcineurin A beta phosphatase, possibly through intracellular sorting of STK39 and PPP3CB (By similarity). Stimulates, via the N-terminal ectodomain, the proliferation and migration of smooth muscle cells, possibly by increasing cell surface expression of the urokinase receptor uPAR/PLAUR. This may promote extracellular matrix proteolysis and hence facilitate cell migration. By acting on the migration of intimal smooth muscle cells, may accelerate intimal thickening following vascular injury. Promotes adhesion of monocytes. Stimulates proliferation and migration of monocytes/macrophages (By similarity). Through its action on intimal smooth muscle cells and macrophages, may accelerate intimal thickening and macrophage foam cell formation in the process of atherosclerosis (By similarity). Regulates hypoxia-enhanced adhesion of hematopoietic stem and progenitor cells to the bone marrow stromal cells via a PLAUR-mediated pathway. This function is mediated by the N-terminal ectodomain. Metabolic regulator, which functions to maintain the adequate balance between lipid storage and oxidation in response to changing environmental conditions, such as temperature and diet. The N-terminal ectodomain negatively regulates adipose tissue energy expenditure, acting through the inhibition the BMP/Smad pathway (By similarity). Sorting receptor that may regulate signaling by the heterodimeric neurotrophic cytokine CLCF1-CRLF1 bound to the CNTFR receptor by promoting the endocytosis of the tripartite complex CLCF1-CRLF1-CNTFR and lysosomal degradation. May regulate IL6 signaling, decreasing cis signaling, possibly by interfering with IL6-binding to membrane-bound IL6R, while up-regulating trans signaling via soluble IL6R PMID 14764453 ↗ · PMID 16174740 ↗ · PMID 16407538 ↗ · PMID 17646382 ↗ · PMID 17855360 ↗ · PMID 18603531 ↗ · PMID 21385844 ↗ · PMID 21994944 ↗ · PMID 23333276 ↗ · PMID 23486467 ↗ · PMID 23977241 ↗ · PMID 24523320 ↗ · PMID 26858303 ↗ · PMID 27322061 ↗ · PMID 28265003 ↗ · PMID 31138794 ↗ |
| 交互作用 | SORL1 與自身 propeptide、APP、分選因子及多種受體或配體互作;互作可影響貨物定位、內吞或訊號,部分關係帶有可能性或相似性註記,且受細胞區室、酸鹼條件及其他分子影響。 | 含實驗來源 | 證據與來源After maturation cleavage, interacts (via N-terminus) with its own propeptide; this interaction prevents interaction with other ligands, including CRLF1, GDNF, GFRA1, IL6 and IL6R. Interacts (via N-terminal ectodomain) with APP, forming a 1:1 stoichiometric complex, including with isoforms APP695, APP751 and APP770; this interaction retains APP in the trans-Golgi network and reduces processing into soluble APP-alpha and amyloid-beta peptides. Also interacts with APP C-terminal fragment C99 and with Abeta40. Interacts with beta-secretase BACE1/BACE; this interaction may affect BACE1-binding to APP and hence reduce BACE1-dependent APP cleavage. Interacts with LRPAP1/RAP. Interacts (via C-terminal cytosolic domain) with GGA1 and GGA2 (via N-terminal VHS domain). Interacts with PACS1. May interact (via the N-terminal ectodomain) with the morphogenetic neuropeptide, also called head activator or HA; this interaction is impaired in the presence of propeptide. Interacts with neurotensin/NTS. Interacts (via the N-terminal ectodomain) with PDGFB homodimer. Interacts (via N-terminal ectodomain) with the uPA receptor PLAUR; this interaction decreases PLAUR internalization. Interacts (via N-terminal ectodomain) with uPA/PLAU and PAI1/SERPINE1, either individually or in complex with each other, leading to endocytosis; this interaction is abolished in the presence of LRPAP1. Also interacts with the ternary complex composed of PLAUR-PLAU-PAI1. Also interacts with tPA/PLAT either alone or in complex with SERPINE1. Interacts (via C-terminus) with AP-1 and AP-2 complexes. Interacts with BMPR1A and BMPR1B (By similarity). Interacts with lipoprotein lipase LPL; this interaction is optimal in slightly acidic conditions. Interacts (via N-terminal ectodomain) with GDNF (via propeptide) and GDNF receptor alpha-1/GFRA1, either individually or in complex with each other. The interaction with GDNF occurs mostly intracellularly. Also interacts with other GDNF receptor alpha family members, including GFRA2, GFRA3 and GFRA4. Interacts with the insulin receptor INSR; this interaction strongly increases the surface exposure of INSR. Interacts (via cytosolic C-terminus) with STK39/SPAK. Interacts (via N-terminal ectodomain) with the heterodimeric complex CRLF1-CLC; within this complex, the interaction is mediated predominantly by the CRLF1 moiety. Interacts with CNTFR, as well as with the tripartite signaling complex formed by CRLF1, CLC and CNTFR. Interacts (via N-terminal ectodomain) with IL6; this interaction leads to IL6 internalization and lysosomal degradation. Binding of SOLRL1 secreted N-terminal ectodomain to IL6 may increase IL6 trans signaling. Interacts with secreted IL6R; this interaction leads to IL6R internalization. Also interacts with transmembrane IL6R; this interaction does not affect IL6R subcellular location. Interacts with APOE. Interacts with apolipoprotein E-rich beta-VLDL (By similarity). Interacts with APOA5; this interaction leads to APOA5 internalization and is abolished by heparin. Interaction with APOA5 results in enhanced binding to chylomicrons. Interacts with ROCK2. Interacts (via cytosolic C-terminus) with PPP3CB/calcineurin A beta (By similarity). Interacts with NTRK2/TRKB; this interaction facilitates NTRK2 trafficking between synaptic plasma membranes, postsynaptic densities and cell soma, hence positively regulates BDNF signaling (By similarity). Interacts (via cytosolic C-terminus) with HSPA12A in an ADP-dependent manner; this interaction affects SORL1 internalization and subcellular localization. Interacts (via N-terminal ectodomain) with ERBB2/HER2 PMID 11082041 ↗ · PMID 11294867 ↗ · PMID 11821067 ↗ · PMID 12530537 ↗ · PMID 14764453 ↗ · PMID 15053742 ↗ · PMID 15364913 ↗ · PMID 16174740 ↗ · PMID 16393139 ↗ · PMID 16407538 ↗ · PMID 17326667 ↗ · PMID 17646382 ↗ · PMID 17855360 ↗ · PMID 18603531 ↗ · PMID 20015111 ↗ · PMID 20385770 ↗ · PMID 21147781 ↗ · PMID 21385844 ↗ · PMID 21994944 ↗ · PMID 23333276 ↗ · PMID 23486467 ↗ · PMID 24523320 ↗ · PMID 26858303 ↗ · PMID 27322061 ↗ · PMID 28265003 ↗ · PMID 30448281 ↗ · PMID 30679749 ↗ · PMID 31138794 ↗ |
| 細胞定位 | SORL1 主要位於 trans-Golgi network 與胞內體,質膜表現較低並可部分內吞;細胞表面蛋白可經蛋白水解釋出 ectodomain,後續片段處理會產生胞質端片段並定位至細胞核。 | 含實驗來源 | 證據與來源Golgi apparatus membrane / Single-pass type I membrane protein; Golgi apparatus, trans-Golgi network membrane / Single-pass type I membrane protein; Endosome membrane / Single-pass type I membrane protein; Early endosome membrane / Single-pass type I membrane protein; Recycling endosome membrane / Single-pass type I membrane protein; Endoplasmic reticulum membrane / Single-pass type I membrane protein; Endosome, multivesicular body membrane / Single-pass type I membrane protein; Cell membrane / Single-pass type I membrane protein; Cytoplasmic vesicle, secretory vesicle membrane / Single-pass type I membrane protein; Secreted; Mostly intracellular, predominantly in the trans-Golgi network (TGN) and in endosome, as well as in endosome-to-TGN retrograde vesicles; found at low levels on the plasma membrane. At the cell surface, partially subjected to proteolytic shedding that releases the ectodomain (also called soluble SORLA, solLR11 or sLR11) in the extracellular milieu. The shedding may be catalyzed by ADAM17/TACE. Following shedding, PSEN1/presenilin-1 cleaves the remaining transmembrane fragment and catalyzes the release of a C-terminal fragment in the cytosol and of a soluble N-terminal beta fragment in the extracellular milieu. The C-terminal cytosolic fragment localizes to the nucleus. At the cell surface, the full-length protein undergoes partial clathrin-dependent endocytosis guided by clathrin adapter protein 2 (AP-2) PMID 11294867 ↗ · PMID 16174740 ↗ · PMID 17855360 ↗ · PMID 21385844 ↗ · PMID 21994944 ↗ · PMID 17646382 ↗ · PMID 23333276 ↗ · PMID 31138794 ↗ · PMID 14764453 ↗ · PMID 15053742 ↗ |
| 調控 | morphogenetic neuropeptide(又稱 head activator 或 HA)可上調 SORL1;造血幹細胞與前驅細胞在缺氧條件下的 SORL1 表現也會上升,而此變化可能由 HIF1A 誘導轉錄介導。 | 含實驗來源 | 證據與來源Up-regulated by morphogenetic neuropeptide, also called head activator or HA. Up-regulated under hypoxic conditions in hematopoietic stem and progenitor cells, a physiological condition encountered by these cells in the endosteum. This up-regulation may be mediated by HIF1A-induced transcription PMID 11082041 ↗ · PMID 23486467 ↗ |
| 疾病關聯 | SORL1 可能參與 Alzheimer disease 的致病過程,但資料未表示其與疾病具因果關係。疾病涉及 APP 蛋白水解產生 amyloid-beta 40 與 amyloid-beta 42,並伴隨 amyloid 沉積及認知能力逐步喪失。 | 含實驗來源 | 證據與來源Alzheimer disease AD Alzheimer disease is a neurodegenerative disorder characterized by progressive dementia, loss of cognitive abilities, and deposition of fibrillar amyloid proteins as intraneuronal neurofibrillary tangles, extracellular amyloid plaques and vascular amyloid deposits. The major constituents of these plaques are neurotoxic amyloid-beta protein 40 and amyloid-beta protein 42, that are produced by the proteolysis of the transmembrane APP protein. The cytotoxic C-terminal fragments (CTFs) and the caspase-cleaved products, such as C31, are also implicated in neuronal death. The gene represented in this entry may be involved in disease pathogenesis MIM: 104300 PMID 21220680 ↗ · PMID 22472873 ↗ · PMID 23565137 ↗ · PMID 24523320 ↗ |
核酸與蛋白質序列
AGTAGCGTTCGCCCGAACATGGCGACACGGAGCAGCAGGA40GGGAGTCGCGACTCCCGTTCCTATTCACCCTGGTCGCACT80GCTGCCGCCCGGAGCTCTCTGCGAAGTCTGGACGCAGAGG120CTGCACGGCGGCAGCGCGCCCTTGCCCCAGGACCGGGGCT160TCCTCGTGGTGCAGGGCGACCCGCGCGAGCTGCGGCTGTG200GGCGCGCGGGGATGCCAGGGGGGCGAGCCGCGCGGACGAG240AAGCCGCTCCGGAGGAAACGGAGCGCTGCCCTGCAGCCCG280AGCCCATCAAGGTGTACGGACAGGTTAGTCTGAATGATTC320CCACAATCAGATGGTGGTGCACTGGGCTGGAGAGAAAAGC360AACGTGATCGTGGCCTTGGCCCGAGATAGCCTGGCATTGG400CGAGGCCCAAGAGCAGTGATGTGTACGTGTCTTACGACTA440TGGAAAATCATTCAAGAAAATTTCAGACAAGTTAAACTTT480GGCTTGGGAAATAGGAGTGAAGCTGTTATCGCCCAGTTCT520ACCACAGCCCTGCGGACAACAAGCGGTACATCTTTGCAGA560CGCTTATGCCCAGTACCTCTGGATCACGTTTGACTTCTGC600AACACTCTTCAAGGCTTTTCCATCCCATTTCGGGCAGCTG640ATCTCCTCCTACACAGTAAGGCCTCCAACCTTCTCTTGGG680CTTTGACAGGTCCCACCCCAACAAGCAGCTGTGGAAGTCA720GATGACTTTGGCCAGACCTGGATCATGATTCAGGAACATG760TCAAGTCCTTTTCTTGGGGAATTGATCCCTATGACAAACC800AAATACCATCTACATTGAACGACATGAACCCTCTGGCTAC840TCCACTGTCTTCCGAAGTACAGATTTCTTCCAGTCCCGGG880AAAACCAGGAAGTGATCCTTGAGGAAGTGAGAGATTTTCA920GCTTCGGGACAAGTACATGTTTGCTACAAAGGTGGTGCAT960cDNA 使用 DNA 字母 T;mRNA 模式改以 U 顯示。轉錄本保留已註解的非編碼區,未另外加入 poly(A) 尾;非編碼 RNA 的參考轉錄本也可能仍需後續加工。數字為所選序列的 1-based 位置。長序列以黃色捲軸瀏覽,可複製或下載完整轉錄本與蛋白質;基因組 DNA 隨捲動取得所需範圍。