基因總覽
ACTB 是蛋白質編碼基因,產物 actin beta 屬於 actin 家族。Actin 是高度保守的蛋白質,可呈單體 G-actin 或聚合態 F-actin;後者能組成絲狀結構,並在細胞質形成交聯網絡。這兩種形式共同構成 actin 的基本存在型態,使其能參與細胞內多種結構與活動。除細胞質中的細胞骨架外,G-actin 與 F-actin 也可位於細胞核。ACTB 產物另見於不同蛋白質複合體,包括 BAF complex、gamma-tubulin ring complex,以及 dynactin complex 周圍的 ACTR1A/ACTB filament。
基因異名與舊稱
異名取自 HGNC,可能包含歷史名稱;蛋白質名稱以 UniProt 註解為準。
染色體位置與基因結構
查看實際轉錄本與 exon 註解
| Transcript | Genomic coordinates | Exons |
|---|---|---|
| ENST00000646664 ★ | 5,527,148–5,530,601 | 6 |
| ENST00000674681 | 5,526,409–5,530,601 | 6 |
| ENST00000642480 | 5,527,147–5,529,949 | 5 |
| ENST00000676397 | 5,527,147–5,531,402 | 6 |
| ENST00000676319 | 5,527,147–5,531,402 | 3 |
| ENST00000473257 | 5,527,147–5,530,604 | 5 |
| ENST00000919298 | 5,527,147–5,531,402 | 6 |
| ENST00000919299 | 5,527,147–5,531,402 | 6 |
| ENST00000899421 | 5,527,148–5,531,402 | 6 |
| ENST00000919300 | 5,527,148–5,531,402 | 6 |
| ENST00001099863 | 5,527,148–5,531,402 | 4 |
| ENST00001099865 | 5,527,148–5,531,402 | 6 |
顯示 12/44 個蛋白質編碼轉錄本;canonical 優先。
帶型與著絲點依 Ensembl 座標繪製;核染色體長度以 GRCh38 第 1 號染色體為共同尺度。黃色標記表示本基因位置,細小區間加粗以利辨識;實際基因長度與 exon 見下方資料。
分子功能與生物學過程
ACTB 的產物 actin beta 會在 G-actin 單體與 F-actin 聚合絲狀態之間形成不同結構。G-actin 聚合後可形成 F-actin,並進一步組成細胞質中的交聯網絡;這些形態都與細胞運動及收縮等活動有關。Actin 本身亦具有 ATP 水解反應,反應式為 ATP + H2O = ADP + phosphate + H(+).
Actin 的功能不只限於細胞質細胞骨架。G-actin 與 F-actin 也可進入細胞核,參與基因轉錄調控,並與受損 DNA 的移動及修復相關。這顯示 actin 的作用範圍涵蓋細胞結構、運動,以及核內的基因表現與 DNA 損傷處理;來源並未進一步指出這些核內作用的具體分子步驟。
ACTB 也參與 gamma-tubulin ring complex(gTuRC)的組裝。此複合體負責調節 alpha-beta tubulin 異源二聚體的 minus-end 成核,這些二聚體接續形成微管原絲。ACTB 在此複合體中的角色,將 actin 與微管形成的起始階段連結起來;來源指出其參與組裝,但未提供更完整的作用機制。
此外,ACTB 與 ACTR1A 形成 filament,作為 dynactin complex 的組裝骨架。依相似性推定,dynactin multiprotein complex 能活化分子馬達 dynein,使其沿微管進行超持續性運輸。這項描述的證據屬於相似性推論,應與其他直接描述的功能證據區分。
Promoter 與基因調控
>ACTB ENST00000646664 GRCh38 chr7:5530501-5531601 strand=-1 5′→3′ 相對 TSS:-1000 到 +100 bp;1101 bp 依轉錄本 TSS 擷取的基因組序列;TSS = 0,兩端包含,未驗證為 promoter GCGGCCTCCAGATGGTCTGGGAGGGCAGTTCAGCTGTGGCTGCGCATAGCAGACATACAACGGACGGTGG GCCCAGACCCAGGCTGTGTAGACCCAGCCCCCCCGCCCCGCAGTGCCTAGGTCACCCACTAACGCCCCAG GCCTTGTCTTGGCTGGGCGTGACTGTTACCCTCAAAAGCAGGCAGCTCCAGGGTAAAAGGTGCCCTGCCC TGTAGAGCCCACCTTCCTTCCCAGGGCTGCGGCTGGGTAGGTTTGTAGCCTTCATCACGGGCCACCTCCA GCCACTGGACCGCTGGCCCCTGCCCTGTCCTGGGGAGTGTGGTCCTGCGACTTCTAAGTGGCCGCAAGCC ACCTGACTCCCCCAACACCACACTCTACCTCTCAAGCCCAGGTCTCTCCCTAGTGACCCACCCAGCACAT TTAGCTAGCTGAGCCCCACAGCCAGAGGTCCTCAGGCCCTGCTTTCAGGGCAGTTGCTCTGAAGTCGGCA AGGGGGAGTGACTGCCTGGCCACTCCATGCCCTCCAAGAGCTCCTTCTGCAGGAGCGTACAGAACCCAGG GCCCTGGCACCCGTGCAGACCCTGGCCCACCCCACCTGGGCGCTCAGTGCCCAAGAGATGTCCACACCTA GGATGTCCCGCGGTGGGTGGGGGGCCCGAGAGACGGGCAGGCCGGGGGCAGGCCTGGCCATGCGGGGCCG AACCGGGCACTGCCCAGCGTGGGGCGCGGGGGCCACGGCGCGCGCCCCCAGCCCCCGGGCCCAGCACCCC AAGGCGGCCAACGCCAAAACTCTCCCTCCTCCTCTTCCTCAATCTCGCTCTCGCTCTTTTTTTTTTTCGC AAAAGGAGGGGAGAGGGGGTAAAAAAATGCTGCACTGTGCGGCGAAGCCGGTGAGTGAGCGGCGCGGGGC CAATCAGCGTGCGCCGTTCCGAAAGTTGCCTTTTATGGCTCGAGCGGCCGCGGCGGCGCCCTATAAAACC CAGCGGCGCGACGCGCCACCACCGCCGAGACCGCGTCCGCCCCGCGAGCACAGAGCCTCGCCTTTGCCGA TCCGCCGCCCGTCCACACCCGCCGCCAGGTAAGCCCGGCCAGCCGACCGGG
EPDnew 實驗支持 promoter/TSS · 1 筆
| EPDnew ID | TSS(1-based) | 股向 | 來源顯示區間 |
|---|---|---|---|
| ACTB_1 ↗ | 7:5,530,601 | 負股 | 5,530,591–5,530,650 |
EPDnew human v006 · UCSC hg38,GRCh38/hg38,透過 UCSC 取得。TSS 具有 CAGE/RAMPAGE 等實驗資料支持;任意擷取的上下游區間仍需另行判讀調控功能,不能視為整段皆經功能驗證。
EPD 封存狀態 ↗ · UCSC 資料說明 ↗ · EPD team, SIB Swiss Institute of Bioinformatics; UCSC Genome Browser · CC BY 4.0
蛋白質結構域與序列
蛋白質三維結構
細胞內定位
ACTB 產物位於細胞質細胞骨架,也可見於細胞核;此外,它出現在含未翻譯 mRNA 的細胞質 mRNP 顆粒中。 來源未描述定位隨條件或異構型改變的情形。
深綠色圓點:來源記載的蛋白質定位;數量不表示含量。
動物細胞結構示意;器官大小與數量不按比例。點選細胞構造可查看定位註解。
交互作用與訊號網絡
拖曳節點後放開可帶動位置變化;點選夥伴查看證據。位置與連線長度不代表結合強度,圖中未推定夥伴彼此之間的關係。
更多交互作用夥伴 · 已取得 34 個夥伴
- ACTG1P63261 · UniProt INTERACTION · 16 experiments
- APPP05067 · UniProt INTERACTION · 8 experiments
- BAIAP2Q9UQB8 · UniProt INTERACTION · 2 experiments
- CAP2P40123 · UniProt INTERACTION · 9 experiments
- CDC37Q16543 · UniProt INTERACTION · 3 experiments
- CFL1P23528 · UniProt INTERACTION · 11 experiments
- CFL2Q549N0 · UniProt INTERACTION · 3 experiments
- CFL2Q9Y281 · UniProt INTERACTION · 11 experiments
- CFTRP13569 · UniProt INTERACTION · 6 experiments
- DSTNP60981 · UniProt INTERACTION · 10 experiments
- DUSP19Q8WTR2 · UniProt INTERACTION · 4 experiments
- EHHADHQ08426 · UniProt INTERACTION · 4 experiments
- EMDP50402 · UniProt INTERACTION · 2 experiments
- ERBB2P04626 · UniProt INTERACTION · 11 experiments
- FBXO25Q8TCJ0-2 · UniProt INTERACTION · 3 experiments
- HSPA8P11142 · UniProt INTERACTION · 2 experiments
- HTRA3P83110 · UniProt INTERACTION · 5 experiments
- HTTP42858 · UniProt INTERACTION · 3 experiments
- MYL12BO14950 · UniProt INTERACTION · 3 experiments
- NCF1P14598 · UniProt INTERACTION · 3 experiments
- NOS3P29474 · UniProt INTERACTION · 3 experiments
- NSMAFQ92636 · UniProt INTERACTION · 2 experiments
- NTAQ1Q96HA8 · UniProt INTERACTION · 6 experiments
- PFN1P07737 · UniProt INTERACTION · 3 experiments
- RNF4P78317 · UniProt INTERACTION · 3 experiments
G-actin 可聚合成雙股螺旋狀 F-actin,每個 actin 可與另外四個 actin 結合。ACTB 也被列為 BAF complex 的組成成分,並與 PFN1、XPO6、EMD、ERBB2、GCSAM、DHX9 等蛋白質有互作記錄;其中 DHX9 的直接互作與連接核糖核蛋白複合體有關。ACTB 亦參與 gTuRC 及 ACTR1A/ACTB filament,後者是 dynactin complex 建構所在的絲狀結構。
疾病與遺傳關聯
來源將 ACTB 變異與多種疾病連結,包括肌張力不全-耳聾症候群 1、Baraitser-Winter syndrome 1、伴有形態異常與發育遲緩的血小板減少症 8、Becker nevus syndrome,以及先天性平滑肌錯構瘤(可伴或不伴半身肥大)。資料將這些疾病描述為由影響該基因的變異所致;疾病表徵各異,涵蓋肌張力不全與感音神經性聽力損失、發育與腦部異常、血小板減少,以及皮膚病灶等。
Contextual Functional Evidence Matrix
矩陣以「功能主張」為列,以細胞情境、干預條件、量測結果與證據來源為欄,方便比較同一功能在不同條件下的支持情形。只有含情境與實驗資訊的紀錄會列入矩陣;一般功能註解另列於下方。
功能註解總覽 · 9 筆
| 功能面向 | 功能敘述 | 證據類型 | 可查核來源 |
|---|---|---|---|
| 功能 | Actin 是高度保守的蛋白質,可聚合形成細胞質中的交聯絲狀網絡,並以 G-actin 單體及 F-actin 聚合態參與細胞運動與收縮。兩種形態也可定位於細胞核,調節基因轉錄及受損 DNA 的移動與修復;此外,Actin 參與 gTuRC 組裝,並依相似性推定為 dynactin complex 周圍絲狀結構的一部分。 | 含實驗來源 | 證據與來源Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA. Plays a role in the assembly of the gamma-tubulin ring complex (gTuRC), which regulates the minus-end nucleation of alpha-beta tubulin heterodimers that grow into microtubule protafilaments. Part of the ACTR1A/ACTB filament around which the dynactin complex is built (By similarity). The dynactin multiprotein complex activates the molecular motor dynein for ultra-processive transport along microtubules (By similarity) PMID 25255767 ↗ · PMID 29581253 ↗ · PMID 29925947 ↗ · PMID 38609661 ↗ · PMID 39321809 ↗ |
| 分子活性 | ATP + H2O = ADP + phosphate + H(+) | 含實驗來源 | |
| 交互作用 | G-actin 聚合形成雙股螺旋狀 F-actin,每個 actin 可結合另外四個 actin。ACTB 被列為 BAF complex 的組成成分,也出現在含未翻譯 mRNA 的 IGF2BP1-dependent mRNP granule,以及由 XPO6、Ran、ACTB、PFN1 組成的複合體。來源另記載多種蛋白質互作;ACTB 與 gTuRC 中的 TUBGCP3、TUBGCP6 互作,並在複合體組裝時與 MZT1 形成穩定初始結構的腔內橋接。依相似性推定,ACTB 亦位於由 8 個 ACTR1A 和 1 個 ACTB 組成的絲狀結構中,供 dynactin complex 建構。 | 含實驗來源 | 證據與來源Polymerization of globular actin (G-actin) leads to a structural filament (F-actin) in the form of a two-stranded helix. Each actin can bind to 4 others. Identified in a IGF2BP1-dependent mRNP granule complex containing untranslated mRNAs. Component of the BAF complex, which includes at least actin (ACTB), ARID1A, ARID1B/BAF250, SMARCA2, SMARCA4/BRG1, ACTL6A/BAF53, ACTL6B/BAF53B, SMARCE1/BAF57 SMARCC1/BAF155, SMARCC2/BAF170, SMARCB1/SNF5/INI1, and one or more of SMARCD1/BAF60A, SMARCD2/BAF60B, or SMARCD3/BAF60C. In muscle cells, the BAF complex also contains DPF3. Found in a complex with XPO6, Ran, ACTB and PFN1. Interacts with PFN1. Interacts with XPO6 and EMD. Interacts with ERBB2. Interacts with GCSAM. Interacts with TBC1D21 (By similarity). Interacts with CPNE1 (via VWFA domain) and CPNE4 (via VWFA domain) (By similarity). Interacts with DHX9 (via C-terminus); this interaction is direct and mediates the attachment to nuclear ribonucleoprotein complexes. Interacts with FAM107A. Associates with the gamma-tubulin ring complex (gTuRC) consisting of TUBGCP2, TUBGCP3, TUBGCP4, TUBGCP5 and TUBGCP6 and gamma-tubulin TUBG1 or TUBG2; within the complex, interacts with TUBGCP3 and TUBGCP6 to form a luminal bridge with MZT1 that stabilizes the initial structure during complex assembly. Part of the ACTR1A/ACTB filament around which the dynactin complex is built (By similarity). The filament contains 8 copies of ACTR1A and 1 ACTB (By similarity). Interacts with TPRN which forms ring-like structures in the stereocilium taper region; the interaction may stabilize stereocilia in inner ear hair cells (By similarity). Interacts with AMOTL2 (via N-terminus), the interaction facilitates binding of cell junction complexes to actin fibers in endothelial cells (By similarity) PMID 10411937 ↗ · PMID 11687588 ↗ · PMID 14592989 ↗ · PMID 15328537 ↗ · PMID 16685646 ↗ · PMID 17289661 ↗ · PMID 17823310 ↗ · PMID 18765789 ↗ · PMID 21555369 ↗ · PMID 21969592 ↗ · PMID 25255767 ↗ · PMID 28604741 ↗ · PMID 38609661 ↗ · PMID 39321809 ↗ |
| 細胞定位 | ACTB 產物位於細胞質細胞骨架及細胞核,也定位於含未翻譯 mRNA 的細胞質 mRNP 顆粒。 | 含實驗來源 | 證據與來源Cytoplasm, cytoskeleton; Nucleus; Localized in cytoplasmic mRNP granules containing untranslated mRNAs PMID 11687588 ↗ · PMID 17289661 ↗ · PMID 29925947 ↗ |
| 疾病關聯 | 肌張力不全-耳聾症候群 1(DDS1)為自體顯性疾病,肌張力不全於青少年期發病,並伴有先天或兒童期發病的感音神經性耳聾。肌張力不全涉及持續性不自主肌肉收縮,常造成異常姿勢;部分患者另有形態異常、骨骼異常,或伴隨智力發展受損的輕度發育遲緩。來源指出此病由影響 ACTB 的變異所致。 | 含實驗來源 | 證據與來源Dystonia-deafness syndrome 1 DDS1 An autosomal dominant form of dystonia with juvenile onset, associated with congenital or childhood-onset sensorineural deafness. Dystonia is defined by the presence of sustained involuntary muscle contraction, often leading to abnormal postures. Some DDS1 patients have dysmorphic features, skeletal anomalies, and/or mild developmental delay with impaired intellectual development. The disease is caused by variants affecting the gene represented in this entry MIM: 607371 PMID 16685646 ↗ · PMID 25255767 ↗ · PMID 28487785 ↗ · PMID 29788902 ↗ · PMID 35005077 ↗ |
| 疾病關聯 | Baraitser-Winter syndrome 1(BRWS1)是罕見發育障礙,特徵包括先天性眼瞼下垂、高拱眉、眼距過寬、眼部 colobomata,以及以前部較明顯的無腦回畸形為特徵的腦部異常。其他典型表現包括出生後身材矮小、小頭症、智能障礙、癲癇與聽力損失。來源指出此病由影響 ACTB 的變異所致。 | 含實驗來源 | 證據與來源Baraitser-Winter syndrome 1 BRWS1 A rare developmental disorder characterized by the combination of congenital ptosis, high-arched eyebrows, hypertelorism, ocular colobomata, and a brain malformation consisting of anterior-predominant lissencephaly. Other typical features include postnatal short stature and microcephaly, intellectual disability, seizures, and hearing loss. The disease is caused by variants affecting the gene represented in this entry MIM: 243310 PMID 22366783 ↗ · PMID 30733661 ↗ |
| 疾病關聯 | 伴有形態異常與發育遲緩的血小板減少症 8(THC8)是自體顯性血小板減少症,特徵為幼兒期發病及血小板大小不均。血小板減少可能增加出血風險並降低凝血能力;患者也可有面部形態異常,以及程度不一的發育遲緩,包括語言遲緩與輕度智力發展受損。來源指出此病由影響 ACTB 的變異所致。 | 含實驗來源 | 證據與來源Thrombocytopenia 8, with dysmorphic features and developmental delay THC8 A form of thrombocytopenia, a hematologic disorder defined by a decrease in the number of platelets in circulating blood, resulting in the potential for increased bleeding and decreased ability for clotting. THC8 is an autosomal dominant form characterized by early-childhood onset of thrombocytopenia with platelet anisotropy. Affected individuals also have dysmorphic facial features and variable developmental delay with speech delay and mildly impaired intellectual development. The disease is caused by variants affecting the gene represented in this entry MIM: 620475 PMID 10411937 ↗ · PMID 25255767 ↗ · PMID 30315159 ↗ · PMID 30733661 ↗ |
| 疾病關聯 | Becker nevus syndrome(BNS)與 Becker 痣、肌肉骨骼異常、單側乳房發育不全、智能障礙、發育遲緩及心肌病相關。Becker 痣是皮膚錯構瘤,通常於兒童期呈單側棕褐色斑塊,青春期時厚度、色素及毛髮生長增加;組織學可見表皮棘皮症、分布不規則的異位平滑肌束與終末毛囊增加,多數病例為散發性。來源指出此病由影響 ACTB 的變異所致。 | 含實驗來源 | 證據與來源Becker nevus syndrome BNS A syndrome characterized by the association of Becker nevi with musculoskeletal abnormalities, unilateral breast hypoplasia, intellectual disability, developmental delay, and cardiomyopathy. Becker nevus is a cutaneous hamartoma that appears in childhood as a unilateral tan patch and increases in thickness, pigmentation, and hair growth during adolescence. Histologically, epidermal acanthosis is accompanied by irregularly dispersed ectopic smooth muscle bundles and increased terminal hair follicles. Most cases are sporadic. The disease is caused by variants affecting the gene represented in this entry MIM: 604919 PMID 28347698 ↗ |
| 疾病關聯 | 先天性平滑肌錯構瘤(CSMH)是良性皮膚病灶,通常呈硬實、略帶色素或膚色的斑塊,可伴毛囊周圍丘疹或粗毛。組織病理特徵為真皮內異位平滑肌過度增生;毛囊數量正常,有時可見角化過度、棘皮症及基底細胞層色素沉著。少數病例伴有半身肥大。來源指出此病由影響 ACTB 的變異所致。 | 含實驗來源 | 證據與來源Congenital smooth muscle hamartoma, with or without hemihypertrophy CSMH A benign skin lesion that usually presents as an indurated, slightly pigmented or flesh-colored plaque with perifollicular papules or coarse hair. Histopathologically, there is excessive proliferation of ectopic smooth muscle within the dermis. Hair follicles are normal in number and hyperkeratosis, acanthosis and hyperpigmentation of the basal cell layer can sometimes be seen. Rarely, CSMH is associated with hemihypertrophy. The disease is caused by variants affecting the gene represented in this entry MIM: 620470 PMID 32170967 ↗ |
核酸與蛋白質序列
ACCGCCGAGACCGCGTCCGCCCCGCGAGCACAGAGCCTCG40CCTTTGCCGATCCGCCGCCCGTCCACACCCGCCGCCAGCT80CACCATGGATGATGATATCGCCGCGCTCGTCGTCGACAAC120GGCTCCGGCATGTGCAAGGCCGGCTTCGCGGGCGACGATG160CCCCCCGGGCCGTCTTCCCCTCCATCGTGGGGCGCCCCAG200GCACCAGGGCGTGATGGTGGGCATGGGTCAGAAGGATTCC240TATGTGGGCGACGAGGCCCAGAGCAAGAGAGGCATCCTCA280CCCTGAAGTACCCCATCGAGCACGGCATCGTCACCAACTG320GGACGACATGGAGAAAATCTGGCACCACACCTTCTACAAT360GAGCTGCGTGTGGCTCCCGAGGAGCACCCCGTGCTGCTGA400CCGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGAT440GACCCAGATCATGTTTGAGACCTTCAACACCCCAGCCATG480TACGTTGCTATCCAGGCTGTGCTATCCCTGTACGCCTCTG520GCCGTACCACTGGCATCGTGATGGACTCCGGTGACGGGGT560CACCCACACTGTGCCCATCTACGAGGGGTATGCCCTCCCC600CATGCCATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGA640CTGACTACCTCATGAAGATCCTCACCGAGCGCGGCTACAG680CTTCACCACCACGGCCGAGCGGGAAATCGTGCGTGACATT720AAGGAGAAGCTGTGCTACGTCGCCCTGGACTTCGAGCAAG760AGATGGCCACGGCTGCTTCCAGCTCCTCCCTGGAGAAGAG800CTACGAGCTGCCTGACGGCCAGGTCATCACCATTGGCAAT840GAGCGGTTCCGCTGCCCTGAGGCACTCTTCCAGCCTTCCT880TCCTGGGCATGGAGTCCTGTGGCATCCACGAAACTACCTT920CAACTCCATCATGAAGTGTGACGTGGACATCCGCAAAGAC960cDNA 使用 DNA 字母 T;mRNA 模式改以 U 顯示。轉錄本保留已註解的非編碼區,未另外加入 poly(A) 尾;非編碼 RNA 的參考轉錄本也可能仍需後續加工。數字為所選序列的 1-based 位置。長序列以黃色捲軸瀏覽,可複製或下載完整轉錄本與蛋白質;基因組 DNA 隨捲動取得所需範圍。